Browse Element(s) Details


Os.17911.1.S1_at

Description gb:AK069405.1
DB_XREF= gi:32979429
TID=Os.17911.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0081B07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023017D04, full insert sequence.
FL= gb:AK104209.1 gb:AK104151.1 gb:AK069405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6074011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17911.1.S1_at--952--4951Chr03:34466700..34466724 (25 bp)
GCATATCGTGCTTGTGGGATCCATG
LOC_Os03g60740
Os.17911.1.S1_at--1038--2631Chr03:34466660..34466684 (25 bp)
AACCATCCACTGAACAGCCTAGGCA
LOC_Os03g60740
Os.17911.1.S1_at--993--8511Chr03:34466307..34466331 (25 bp)
TGGAAGCGCAAGTCAGAACAGTATT
LOC_Os03g60740
Os.17911.1.S1_at--1156--10231Chr03:34466284..34466308 (25 bp)
TTTGGCAGACAGTGGAGTCCCTTAT
LOC_Os03g60740
Os.17911.1.S1_at--714--6611Chr03:34465993..34466017 (25 bp)
GTTGGCAATGACGATGAACTTCTCC
LOC_Os03g60740
Os.17911.1.S1_at--1037--8991Chr03:34465745..34465955 (25 bp)
TGAAGTTTGTGTTCAGGCCCTGCAG
LOC_Os03g60740
Os.17911.1.S1_at--399--3491Chr03:34465732..34465755 (24 bp)
CAGGCCCTGCAGTATGAAGAGACAA
LOC_Os03g60740
Os.17911.1.S1_at--581--5291Chr03:34465675..34465699 (25 bp)
GAAGGCACAGGCACACCAACAAAAG
LOC_Os03g60740
Os.17911.1.S1_at--878--6171Chr03:34465601..34465625 (25 bp)
GAGGAGCAATCTCATCTCGGTTTCC
LOC_Os03g60740
Os.17911.1.S1_at--287--9611Chr03:34465590..34465614 (25 bp)
TCATCTCGGTTTCCTTGTGTATTGG
LOC_Os03g60740
Os.17911.1.S1_at--226--3951Chr03:34465507..34465531 (25 bp)
CGTCATCGTTTCCTGAAAACTCCTA
LOC_Os03g60740
Target Sequence 
GCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGG
TTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGNCTGCAAGAC
AAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGC
TGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTG
AAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGC
AATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGC
TGTAATTCGTCATCGTTTCCTGAAAACTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis