Browse Element(s) Details


Os.2368.1.S1_at

Description gb:AF247164.1
DB_XREF= gi:7407662
TID=Os.2368.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2368 (NCBI UniGene Cluster)
DEF=Oryza sativa alpha-expansin OsEXPA7 mRNA, complete cds.
PROD=alpha-expansin OsEXPA7
FL= gb:AF247164.1 gb:AK119215.1 gb:AK101784.1 gb:AK063455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6072011/11Alpha-expansin 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2368.1.S1_at--728--1431Chr03:34447956..34447980 (25 bp)
AGAACTGGCAGTCCAACTCCGTCCT
LOC_Os03g60720
Os.2368.1.S1_at--368--7611Chr03:34447829..34447853 (25 bp)
GGGCAAGAACTTCCGGGTCTGAATT
LOC_Os03g60720
Os.2368.1.S1_at--539--1491Chr03:34447798..34447822 (25 bp)
AGCAAAACTGCAATATACCCTCTTA
LOC_Os03g60720
Os.2368.1.S1_at--830--311Chr03:34447784..34447808 (25 bp)
ATACCCTCTTATTTACTCATCTAGT
LOC_Os03g60720
Os.2368.1.S1_at--601--7071Chr03:34447761..34447785 (25 bp)
GTAATTACTGTCATTATAGCGAGCA
LOC_Os03g60720
Os.2368.1.S1_at--52--1631Chr03:34447744..34447768 (25 bp)
AGCGAGCAGGTGTGTTTTTTACCTT
LOC_Os03g60720
Os.2368.1.S1_at--811--10551Chr03:34447703..34447727 (25 bp)
TTCTTCGGTTGGTGGCCTTGTCAAA
LOC_Os03g60720
Os.2368.1.S1_at--1102--2551Chr03:34447621..34447645 (25 bp)
AACTGGTAAATTGCTAGTACTGCTG
LOC_Os03g60720
Os.2368.1.S1_at--1059--1171Chr03:34447606..34447630 (25 bp)
AGTACTGCTGTTACTCATCATCATC
LOC_Os03g60720
Os.2368.1.S1_at--1008--411Chr03:34447584..34447608 (25 bp)
ATCATCGCTAGTGGTCACTGCTAGT
LOC_Os03g60720
Os.2368.1.S1_at--718--6471Chr03:34447529..34447553 (25 bp)
GATACTGCATCATGTTGGTTGGTGA
LOC_Os03g60720
Target Sequence 
AGAACTGGCAGTCCAACTCCGTCCTCGTCGGCCAGGCGCTCTCGTTCCGCGTCACCGGCAGCGACCGCCGCACCTCCACA
TCCTGGAACGCCGCACCCGCCGGATGGCACTTCGGCCAGACCTTCGAGGGCAAGAACTTCCGGGTCTGAATTGAATGAAG
CAAAACTGCAATATACCCTCTTATTTACTCATCTAGTAATTACTGTCATTATAGCGAGCAGGTGTGTTTTTTACCTTGGT
TAAGTTTGGGTTNCTTCTTCGGTTGGTGGCCTTGTCAAAGTGAGGGGCCGGGGGAAAACAGGTGGTAAAGACTAGTNCTA
GTGTCAATTAGGGTTAAACTGGTAAATTGCTAGTACTGCTGTTACTCATCATCATCATCGCTAGTGGTCACTGCTAGTAG
TAGTTGTGCTAGTGCATGTNTGGTNATGGATACTGCATCATGTTGGTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis