Browse Element(s) Details


Os.32445.1.S1_at

Description gb:AK070847.1
DB_XREF= gi:32980870
TID=Os.32445.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBb0081B07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064M04, full insert sequence.
FL= gb:AK104902.1 gb:AK070847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g607106/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32445.1.S1_at--37--5511Chr03:34446304..34446328 (25 bp)
GAACAGCGGTAAGCCTCGTCGGAAA
LOC_Os03g60710
Os.32445.1.S1_at--71--6611Chr03:34446352..34446376 (25 bp)
GATTGGTCCGAATCCAACAGCATTG
LOC_Os03g60710
Os.32445.1.S1_at--629--7251Chr03:34446377..34446401 (25 bp)
GTCCGCTCCCATTAGCAAGGCAGAA
LOC_Os03g60710
Os.32445.1.S1_at--495--7331Chr03:34446445..34446469 (25 bp)
GTGCATATTCCTTGTTGTCATCAGT
LOC_Os03g60710
Os.32445.1.S1_at--1074--8351Chr03:34446584..34446608 (25 bp)
GGCGTGGCTGTCTCAATGGGTTCAA
LOC_Os03g60710
Os.32445.1.S1_at--310--2711Chr03:34446607..34446631 (25 bp)
AAGCTTTCCTGGTAGCTCATCGATC
LOC_Os03g60710
Os.32445.1.S1_at--31--3871Chr03:34446678..34446702 (25 bp)
CTGAGTGGTGTCTACTGTTGTGTTC
NONE
Os.32445.1.S1_at--1051--10531Chr03:34446700..34446724 (25 bp)
TTCAGTGGTCTGATGGTGTCATGCT
NONE
Os.32445.1.S1_at--389--7591Chr03:34446782..34446806 (25 bp)
GGGCTATAGCCACACTGTCAAATGC
NONE
Os.32445.1.S1_at--571--8731Chr03:34446797..34446821 (25 bp)
TGTCAAATGCTAACCTCCCTGTCAA
NONE
Os.32445.1.S1_at--428--8491NONE
TGGCTATCCAGCATGTTAACTTTAA
NONE
Target Sequence 
GAACAGCGGTAAGCCTCGTCGGAAAAGCTTGGGAGAAACTCGGGAAAAGATTGGTCCGAATCCAACAGCATTGGTCCGCT
CCCATTAGCAAGGCAGAATGTGAGTGTCATTAGTTGGTATTTGGTAGTTTGTAAATATGTTGTGCATATTCCTTGTTGTC
ATCAGTCTTTTGGCAACAAGTCCTTTTTGTGCATTATCATGAGCTTCTTAACTTCAGCTAANTAGATGCTGTTGTATGTN
GAAACTCATGGCATTAAAGTAGAGCTCATGTTNCAAATCTGGCGTGGCTGTCTCAATGGGTTCAAGCTTTCCTGGTAGCT
CATCGATCAGCATGCANCATAGGTACATTGTCATCAACACATCATTGGATCATACTGAGTGGTGTCTACTGTTGTGTTCA
GTGGTCTGATGGTGTCATGCTGAAGTGGTTTGGGCCGAAATCTCCGGCGAGATGGATAACAATTTATCAAATAGCTATGG
GCTATAGCCACACTGTCAAATGCTAACCTCCCTGTCAAAGCCATTGNTTTNGGCCCCAACACNCCTGATGATGGCTATCC
AGCATGTTAACTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis