Browse Element(s) Details


Os.19321.1.S1_at

Description gb:AK073306.1
DB_XREF= gi:32983329
TID=Os.19321.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025G07, full insert sequence.
FL= gb:AK071722.1 gb:AK073306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6065011/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19321.1.S1_at--70--4191Chr03:34414339..34414363 (25 bp)
CCCTTTTTCATCATAAGCTCAGCAC
LOC_Os03g60650
Os.19321.1.S1_at--745--8091Chr03:34414283..34414307 (25 bp)
GGACTTTACCAGTATTTCACCAACG
LOC_Os03g60650
Os.19321.1.S1_at--601--1231Chr03:34414251..34414275 (25 bp)
AGTTGCTCAGGTCGAAATGTTCATC
LOC_Os03g60650
Os.19321.1.S1_at--672--1811Chr03:34414207..34414231 (25 bp)
ACCCTGCCCAACATCTTGTGGAGGA
LOC_Os03g60650
Os.19321.1.S1_at--864--931Chr03:34414186..34414210 (25 bp)
AGGAAGTTCTTTTCCGTGCTGCCAA
LOC_Os03g60650
Os.19321.1.S1_at--783--5451Chr03:34414002..34414026 (25 bp)
GAACTGATCGAGATACCACATGGTG
LOC_Os03g60650
Os.19321.1.S1_at--1088--10151Chr03:34413953..34413977 (25 bp)
TATCTGTCATCGTCATCTCTTTGGA
LOC_Os03g60650
Os.19321.1.S1_at--593--1611Chr03:34413836..34413860 (25 bp)
AGCTGAGAGGTGTTCTTGCGGCTAC
LOC_Os03g60650
Os.19321.1.S1_at--980--10831Chr03:34413755..34413779 (25 bp)
TTGGATTCGGCTTGGGCTCTCGGCA
LOC_Os03g60650
Os.19321.1.S1_at--5--2111Chr03:34413731..34413755 (25 bp)
ACATCCAGCTGAATCGCCATGAATC
LOC_Os03g60650
Os.19321.1.S1_at--163--8351Chr03:34413698..34413722 (25 bp)
GGCTGGCCGCGTGGTATAATATGTT
LOC_Os03g60650
Target Sequence 
CCCTTTTTCATCATAAGCTCAGCACAAGGGATAGATTCTTGATATTATCTTCAGATGGACTTTACCAGTATTTCACCAAC
GAGGAGGCAGTTGCTCAGGTCGAAATGTTCATCGCAACAACCCCTGAAGGCGACCCTGCCCAACATCTTGTGGAGGAAGT
TCTTTTCCGTGCTGCCAACAAAGCAGGAATGGACTTTCATGAACTGATCGAGATACCACATGGTGATCGTCGGCGATACC
ATGACGATGTATCTGTCATCGTCATCTCTTTGGAGGGCAGGATTTGGAGATCCTGCGTGTAAATAGAAACAATAGTAGGC
TAGTGAAACAAAACGTATAGAGGGGGTTCTTCCCATGCCTTCCTTGAGCTGAGAGGTGTTCTTGCGGCTACTCTACTCCT
CTTCCCCCAGTTGCTACTGTACAATATCAACCAAGCACTGTGGGGGGTTGGATTCGGCTTGGGCTCTCGGCACATCCAGC
TGAATCGCCATGAATCGCCCGCAGGGCTGGCCGCGTGGTATAATATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis