Browse Element(s) Details


Os.11822.1.S1_at

Description gb:AK102784.1
DB_XREF= gi:32987993
TID=Os.11822.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K19, full insert sequence.
FL= gb:AK069740.1 gb:AK102784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6062011/11Heat shock cognate 70 kDa protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11822.1.S1_at--321--5971Chr03:34389134..34389158 (25 bp)
GAGAAGATTGCTTCCAAGCTGCCAG
LOC_Os03g60620
Os.11822.1.S1_at--744--2691Chr03:34389149..34389173 (25 bp)
AAGCTGCCAGCTGACGACAAGAAAA
LOC_Os03g60620
Os.11822.1.S1_at--285--6131Chr03:34389266..34389290 (25 bp)
GAGGGCCTGTGCAACCCAATTATTG
LOC_Os03g60620
Os.11822.1.S1_at--573--5291Chr03:34389330..34389354 (25 bp)
GAATGGACGATGATGCTCCGGCTGC
LOC_Os03g60620
Os.11822.1.S1_at--39--10271Chr03:34389447..34389471 (25 bp)
TTTGTTTTCAAATCCCAGTTGGCAA
LOC_Os03g60620
Os.11822.1.S1_at--984--6611Chr03:34389464..34389488 (25 bp)
GTTGGCAATCATACCACTTGGGCTA
LOC_Os03g60620
Os.11822.1.S1_at--1102--3351Chr03:34389521..34389545 (25 bp)
CACCTGATGCTTGAGTTTGGACTTC
LOC_Os03g60620
Os.11822.1.S1_at--394--8131Chr03:34389539..34389563 (25 bp)
GGACTTCTAGTCTCAGATTCGAACA
LOC_Os03g60620
Os.11822.1.S1_at--59--7311Chr03:34389584..34389608 (25 bp)
TGTTTCAGTTTTTACCAGGTGGCCG
LOC_Os03g60620
Os.11822.1.S1_at--33--9971Chr03:34389618..34389642 (25 bp)
TACCCCTTTTGTTTTACTGCTGTAT
LOC_Os03g60620
Os.11822.1.S1_at--725--6511Chr03:34389656..34389680 (25 bp)
GATTATGCTAGGTGGGTTTGGCCCC
LOC_Os03g60620
Target Sequence 
GAGAAGATTGCTTCCAAGCTGCCAGCTGACGACAAGAAAAAGATTGAGGACGCGGTCGAGCAGGCGATCCAGTGGCTGGA
CAACAACCAGCTCGCTGAGGTTGAAGAGTTCGAAGACAAGATGAAGGAGCTGGAGGGCCTGTGCAACCCAATTATTGCCA
AGATGTACCAGGGTGCTGGTGCCGACATGGGTGGTGGAATGGACGATGATGCTCCGGCTGCTGGTGGGAGTGGTGCTGGC
CCTAAGATTGAGGAGGTCGACTAAATCAATACACCTTCGTATATGTGATGNGAAAAATATTGATCATACACCTTTTGTTT
TCAAATCCCAGTTGGCAATCATACCACTTGGGCTACTCGTACTTTCTGTTAACTAAAGACTTATTATCACCTGATGCTTG
AGTTTGGACTTCTAGTCTCAGATTCGAACAGACATTCAGTAATGTGATGATGTTTCAGTTTTTACCAGGTGGCCGCGGCA
GAATTACCCCTTTTGTTTTACTGCTGTATTACAATTGCAATTGATTATGCTAGGTGGGTTTGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis