Browse Element(s) Details


OsAffx.3658.1.S1_at

Description tigr:9631.m05973
TID=OsAffx.3658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6063011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3658.1.S1_at--1033--8371Chr03:34394994..34395018 (25 bp)
GGCGATCACTACAGCTCCGGTGCGT
LOC_Os03g60630
OsAffx.3658.1.S1_at--187--9871Chr03:34395003..34395027 (25 bp)
TACAGCTCCGGTGCGTCCAGGCTAG
LOC_Os03g60630
OsAffx.3658.1.S1_at--532--10071Chr03:34395025..34395049 (25 bp)
TAGGGTTTCCCGGATTGAGCTCGCT
LOC_Os03g60630
OsAffx.3658.1.S1_at--961--4251Chr03:34395034..34395058 (25 bp)
CCGGATTGAGCTCGCTGGATCCCGT
LOC_Os03g60630
OsAffx.3658.1.S1_at--832--3531Chr03:34395098..34395122 (25 bp)
CATCGGGCTAGAGCAGTGGCGCCTC
LOC_Os03g60630
OsAffx.3658.1.S1_at--386--8471Chr03:34395114..34395138 (25 bp)
TGGCGCCTCCCGCAGATACAGCAAT
LOC_Os03g60630
OsAffx.3658.1.S1_at--914--1251Chr03:34395127..34395151 (25 bp)
AGATACAGCAATTCCCCTTCTTGAG
LOC_Os03g60630
OsAffx.3658.1.S1_at--794--3131Chr03:34395136..34395160 (25 bp)
AATTCCCCTTCTTGAGCCGCAACGA
LOC_Os03g60630
OsAffx.3658.1.S1_at--765--3191Chr03:34395175..34395199 (25 bp)
CAATGTCCGGCATTTACCCGTTCGA
LOC_Os03g60630
OsAffx.3658.1.S1_at--535--9431Chr03:34395270..34395294 (25 bp)
TCGGGCCTGATCACGCAGCTCGCAT
LOC_Os03g60630
OsAffx.3658.1.S1_at--1121--5151Chr03:34395313..34395337 (25 bp)
GCAACGCTCAGTCCGCGGCGATGAA
LOC_Os03g60630
Target Sequence 
GGCGATCACTACAGCTCCGGTGCGTCCAGGCTAGGGTTTCCCGGATTGAGCTCGCTGGATCCCGTCGACTACCAGCTCGG
CGGCGGCGCCGCCGCCGCCGCCGCCATCGGGCTAGAGCAGTGGCGCCTCCCGCAGATACAGCAATTCCCCTTCTTGAGCC
GCAACGACGCCATGCCGCCGCCAATGTCCGGCATTTACCCGTTCGACGCGGAGGCCGCCGCCGACGCCGCCGGCTTCGCC
GGCCAGTTGCTGGCCGGCACCAAGGTGCCCGGCTCGTCGGGCCTGATCACGCAGCTCGCATCCGTCAAGATGGAGGACAG
CAACGCTCAGTCCGCGGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis