Browse Element(s) Details


Os.32445.2.S1_x_at

Description gb:NM_185169.1
DB_XREF= gi:34897423
GEN=OSJNBb0081B07.25
TID=Os.32445.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32445 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBb0081B07.25), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6071011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32445.2.S1_x_at--16--5371Chr03:34445284..34445308 (25 bp)
GAAGAGCCATGTATCCACGAGGGTG
LOC_Os03g60710
Os.32445.2.S1_x_at--1--631Chr03:34445325..34445349 (25 bp)
ATGCTGCTCCAGAATATCTTTCAAC
LOC_Os03g60710
Os.32445.2.S1_x_at--76--1311Chr03:34445961..34445985 (25 bp)
AGATGATGTCAGGTCGTCGTGCCAT
LOC_Os03g60710
Os.32445.2.S1_x_at--858--8411Chr03:34445997..34446021 (25 bp)
GGCCCCAGGGTGAACACAATCTTGT
LOC_Os03g60710
Os.32445.2.S1_x_at--143--1251Chr03:34446057..34446081 (25 bp)
AGATATTCCGTGTCCTGGATACCAG
LOC_Os03g60710
Os.32445.2.S1_x_at--967--7071Chr03:34446090..34446114 (25 bp)
GTCAATACTCTCACGTTGGAGCACA
LOC_Os03g60710
Os.32445.2.S1_x_at--411--10851Chr03:34446105..34446129 (25 bp)
TTGGAGCACAAACAGTTGCCACCCT
LOC_Os03g60710
Os.32445.2.S1_x_at--961--10711Chr03:34446129..34446153 (25 bp)
TTGCTCTTGAGTGCCTGTCGTACGA
LOC_Os03g60710
Os.32445.2.S1_x_at--434--8191Chr03:34446175..34446199 (25 bp)
GGAAGCTGTGGTCACTATTCTTGAA
LOC_Os03g60710
Os.32445.2.S1_x_at--386--2671Chr03:34446279..34446303 (25 bp)
AAGCCCCTACTGCAAATGCTAGCAA
LOC_Os03g60710
Os.32445.2.S1_x_at--643--5171Chr03:34446300..34446481 (25 bp)
GCAAGAACAGCGTCTTTTGGCAACA
LOC_Os03g60710
Target Sequence 
GAAGAGCCATGTATCCACGAGGGTGATGGGAACATATGGTTATGCTGCTCCAGAATATCTTTCAACAGGCCATTTAACTG
CGAAGAGTGATGTTTATAGCTTTGGGGTGGTGCTGCTGGAGATGATGTCAGGTCGTCGTGCCATTGACAAGAACCGGCCC
CAGGGTGAACACAATCTTGTGGAATGGGCCCGACCATACCTCACACATAAGCGCAAGATATTCCGTGTCCTGGATACCAG
GCTAGAAGGTCAATACTCTCACGTTGGAGCACAAACAGTTGCCACCCTTGCTCTTGAGTGCCTGTCGTACGAAGCTAAGA
TGAGGCCTTCTATGGAAGCTGTGGTCACTATTCTTGAAGAGCTTCAAGAATCCAGCCATGTGGACAGGAAACCAGCAGCA
GAGAGGCGTCAAGAATCCACCACAGGTACAGGCAAAAAAGCCCCTACTGCAAATGCTAGCAAGAACAGCGTCTTTTGGCA
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32445.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis