Browse Element(s) Details


Os.26477.1.S1_x_at

Description gb:NM_195973.1
DB_XREF= gi:37533305
TID=Os.26477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein ORF62 from chromosome 10 chloroplast insertion (OSJNBb0075K12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein ORF62 from chromosome 10 chloroplast insertion (OSJNBb0075K12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g606709/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26477.1.S1_x_at--78--4957Chr10:10487712..10487736 (25 bp)
GCATTAATTGTGACTTCCTCAGTCT
NONE
Os.26477.1.S1_x_at--703--3176Chr10:10487717..10487741 (25 bp)
AATTGTGACTTCCTCAGTCTTAGTC
NONE
Os.26477.1.S1_x_at--1099--3635Chr10:10487725..10487749 (25 bp)
CTTCCTCAGTCTTAGTCATTAGTGT
NONE
Os.26477.1.S1_x_at--276--7151Chr10:10487733..10487757 (25 bp)
GTCTTAGTCATTAGTGTACCCTTTG
NONE
Os.26477.1.S1_x_at--312--1091Chr10:10487745..10487769 (25 bp)
AGTGTACCCTTTGTATTTGCTTCTC
NONE
Os.26477.1.S1_x_at--13--10276Chr10:10487754..10487778 (25 bp)
TTTGTATTTGCTTCTCCTGATGGTT
NONE
Os.26477.1.S1_x_at--1142--10716Chr10:10487761..10487785 (25 bp)
TTGCTTCTCCTGATGGTTGGTCAAA
NONE
Os.26477.1.S1_x_at--508--10596Chr10:10487765..10487789 (25 bp)
TTCTCCTGATGGTTGGTCAAACAAT
NONE
Os.26477.1.S1_x_at--191--2595Chr10:10487793..10487817 (25 bp)
AACGTTGTATTTTCCGGTACATCAT
NONE
Os.26477.1.S1_x_at--704--6875Chr10:10487799..10487823 (25 bp)
GTATTTTCCGGTACATCATTATGGA
NONE
Os.26477.1.S1_x_at--1050--9595Chr10:10487814..10487838 (25 bp)
TCATTATGGATTGGACTGGTCTTTC
NONE
Target Sequence 
GCATTAATTGTGACTTCCTCAGTCTTAGTCATTAGTGTACCCTTTGTATTTGCTTCTCCTGATGGTTGGTCAAACAATAA
AAACGTTGTATTTTCCGGTACATCATTATGGATTGGACTGGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26477.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis