Browse Element(s) Details


Os.4641.2.S1_at

Description gb:NM_185170.1
DB_XREF= gi:34897425
GEN=OSJNBb0081B07.26
TID=Os.4641.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4641 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative dolichyl-phosphate beta-glucosyltransferase (OSJNBb0081B07.26), mRNA.
PROD=putative dolichyl-phosphatebeta-glucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6070011/11glycosyl transferase, group 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4641.2.S1_at--442--6291Chr03:34437541..34437565 (25 bp)
GATGTTGAGCTTGTATACCTATGCA
LOC_Os03g60700
Os.4641.2.S1_at--372--6891Chr03:34437529..34437553 (25 bp)
GTATACCTATGCAAGCATCTCAGGA
LOC_Os03g60700
Os.4641.2.S1_at--1016--651Chr03:34437521..34437545 (25 bp)
ATGCAAGCATCTCAGGATCCCAATG
LOC_Os03g60700
Os.4641.2.S1_at--567--4971Chr03:34437515..34437539 (25 bp)
GCATCTCAGGATCCCAATGGCTGAA
LOC_Os03g60700
Os.4641.2.S1_at--886--8331Chr03:34437497..34437521 (25 bp)
GGCTGAAGTATCTGTAAACTGGACT
LOC_Os03g60700
Os.4641.2.S1_at--708--9831Chr03:34437483..34437507 (25 bp)
TAAACTGGACTGAAATACCTGGATC
LOC_Os03g60700
Os.4641.2.S1_at--798--651Chr03:34437359..34437383 (25 bp)
ATGCACGGTACGCTGACAATCACCA
LOC_Os03g60700
Os.4641.2.S1_at--193--1931Chr03:34437355..34437379 (25 bp)
ACGGTACGCTGACAATCACCATAGC
LOC_Os03g60700
Os.4641.2.S1_at--778--171Chr03:34437286..34437310 (25 bp)
ATTTTTCCAAGATTTTCACCTAGAG
LOC_Os03g60700
Os.4641.2.S1_at--595--10291Chr03:34437283..34437307 (25 bp)
TTTCCAAGATTTTCACCTAGAGAGA
LOC_Os03g60700
Os.4641.2.S1_at--1072--10311Chr03:34437273..34437297 (25 bp)
TTTCACCTAGAGAGAATCCATTTGT
LOC_Os03g60700
Target Sequence 
GATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACTGGACTGAAATACCTGG
ATCCAAAGTGCGTATGACAAGCATCCTGCATATGGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATAT
GGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTT
AGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4641.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis