Browse Element(s) Details


Os.24124.1.S1_at

Description gb:AK102999.1
DB_XREF= gi:32988208
TID=Os.24124.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0081B07.27 (OSJNBb0081B07.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116F23, full insert sequence.
FL= gb:AK102999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g606909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24124.1.S1_at--5--2271Chr03:34432535..34432559 (25 bp)
AAATCTATATTTTCTGCGGACACAA
LOC_Os03g60690
Os.24124.1.S1_at--365--9131Chr03:34432521..34432545 (25 bp)
TGCGGACACAAGTTAACCAGGCTGT
LOC_Os03g60690
Os.24124.1.S1_at--237--2451Chr03:34432495..34432519 (25 bp)
AAAATATTCCATATCTTCCGCCAAG
LOC_Os03g60690
Os.24124.1.S1_at--931--4391Chr03:34432476..34432500 (25 bp)
GCCAAGCTCTCCATGGAATGCACAA
LOC_Os03g60690
Os.24124.1.S1_at--903--2351Chr03:34432453..34432477 (25 bp)
AAAGCTGCGGAGTTGATCTATTTCA
LOC_Os03g60690
Os.24124.1.S1_at--127--371Chr03:34432416..34432440 (25 bp)
ATAATCTCTTTGTCGGCGATGGCTC
LOC_Os03g60690
Os.24124.1.S1_at--56--8711NONE
TGTCGCTCAGTTTCCTTGAGGACAT
NONE
Os.24124.1.S1_at--870--2831Chr03:34432303..34432327 (25 bp)
AAGTACTGGCACGATCTCGACGGAC
LOC_Os03g60690
Os.24124.1.S1_at--298--8111Chr03:34432282..34432306 (25 bp)
GGACTCGCCGATATCAACCAAGGCT
LOC_Os03g60690
Os.24124.1.S1_at--655--8011NONE
GGAGTCTTTCCTCTAGTTCATGAAG
NONE
Os.24124.1.S1_at--614--8211Chr03:34432222..34432246 (25 bp)
GGAATCTGCTCCTTCAGGTAGGGAA
LOC_Os03g60690
Target Sequence 
AAATCTATATTTTCTGCGGACACAAGTTAACCAGGCTGTCAAAATATTCCATATCTTCCGCCAAGCTCTCCATGGAATGC
ACAAAGCTGCGGAGTTGATCTATTTCAAGGTCACATTCCATAATCTCTTTGTCGGCGATGGCTCTGACTGCATCGAGGAC
GCCGTAGCCCTGTCGCTCAGTTTCCTTGAGGACATCGGCCCAGCGAGCCAGCCATTCCATTCTTCTTATGTCAAGTACTG
GCACGATCTCGACGGACTCGCCGATATCAACCAAGGCTTGTTGGAGTCTTTCCTCTAGTTCATGAAGTTTCCAGGAATCT
GCTCCTTCAGGTAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis