Browse Element(s) Details


Os.4641.1.S1_x_at

Description gb:AK102290.1
DB_XREF= gi:32987499
TID=Os.4641.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dolichyl-phosphate beta-glucosyltransferase (OSJNBb0081B07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089K11, full insert sequence.
FL= gb:AK102290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g607008/11glycosyl transferase, group 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4641.1.S1_x_at--219--10231Chr03:34437830..34437854 (25 bp)
TATTGACAGCTGGTCCTGGGATCAG
LOC_Os03g60700
Os.4641.1.S1_x_at--330--5631Chr03:34437704..34437828 (25 bp)
GACACACAGTGTGGTTTCAAGATGT
LOC_Os03g60700
Os.4641.1.S1_x_at--1065--2791Chr03:34437686..34437710 (25 bp)
AAGATGTTTACTCGAGCTGCTGCAA
LOC_Os03g60700
Os.4641.1.S1_x_at--21--5911Chr03:34437673..34437697 (25 bp)
GAGCTGCTGCAAGGAAACTTTTTAC
LOC_Os03g60700
Os.4641.1.S1_x_at--346--3571Chr03:34437336..34437360 (25 bp)
CATAGCTTATCATCACTGGACTGTA
LOC_Os03g60700
Os.4641.1.S1_x_at--977--3311Chr03:34437323..34437347 (25 bp)
CACTGGACTGTATACCAAGCTTAGT
LOC_Os03g60700
Os.4641.1.S1_x_at--1099--1351Chr03:34437263..34437287 (25 bp)
AGAGAATCCATTTGTGGCGCTGAGT
LOC_Os03g60700
Os.4641.1.S1_x_at--995--8391Chr03:34437248..34437272 (25 bp)
GGCGCTGAGTATTCCATCATAGATT
LOC_Os03g60700
Os.4641.1.S1_x_at--711--5211NONE
GAATCGAAAATTGGACTACCCTTCA
NONE
Os.4641.1.S1_x_at--259--8131Chr03:34437129..34437152 (24 bp)
GGACTACCCTTCATGTTTGATGTTT
NONE
Os.4641.1.S1_x_at--4--6611NONE
GATTGGACGGATGCGTTTTGTTTTT
NONE
Target Sequence 
TATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTT
ACAAATATCAGATTGAAGAGGTGGTGTTTTGATNTTGANCTTGTATACCTATGCNAGCANNTCAGGATCCCAATGNCTGA
AGTATCTNTAAACTGNANTGAAATACNTGGATCCAAAGTGNGTATGACAAGCATCCTGCATATGNTATTTGAGCTCCTGC
NGATCAAAGTAGGTTATGGACNGAGCATATGGAAAATCTATTCATAGACCATATGCACGNNACGCTGACAATCNCCATAG
CTTATCATCACTGGACTGTATACCAAGCTTAGTNCNCACATGTAAAATTTTTCCANAGATTTTCNCCTAGNAGAGAATCC
ATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCACGTGTATNGTTCCTGCTGATNAANNTCTTT
AATCATTTTTTTAGCATTTTACGAAGTTGGGAAGAATCGAAAATTGGACTACCCTTCATGTTTGATGTTTGATTGGACGG
ATGCGTTTTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4641.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis