Browse Element(s) Details

Os.37217.2.S1_at

Description

gb:AK060050.1
DB_XREF= gi:32970068
TID=Os.37217.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative FtsJ cell division protein (OSJNBb0081B07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A03, full insert sequence.
FL= gb:AK060050.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g60750	11/11	FtsJ-like methyltransferase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g60710	Os.32445.2.S1_x_at	11/11	3	+	34441923..34446690	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710	Os.32445.1.S1_at	6/11	3	+	34441923..34446690	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720	Os.2368.1.S1_at	11/11	3	+	34447297..34450213	Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730	Os.14508.1.S1_at	11/11	3	+	34460682..34464908	BED zinc finger family protein, expressed
LOC_Os03g60730	Os.14508.2.S1_x_at	11/11	3	+	34460682..34464908	BED zinc finger family protein, expressed
LOC_Os03g60740	Os.17911.1.S1_at	11/11	3	+	34465420..34468030	expressed protein
LOC_Os03g60750	Os.37217.2.S1_at	11/11	3	+	34468139..34470365	FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760	Os.37217.1.S1_at	11/11	3	+	34472116..34472762	expressed protein
LOC_Os03g60780	Os.6349.1.S1_a_at	11/11	3	+	34475214..34478234	Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790	Os.33670.3.S1_s_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.2.S1_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.1.S1_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.3.S1_x_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60800	Os.26905.2.S1_x_at	11/11	3	+	34480491..34484229	hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800	Os.26905.1.A1_at	9/11	3	+	34480491..34484229	hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810	Os.44937.1.S1_at	11/11	3	+	34484417..34486932	Protein kinase domain containing protein, expressed
LOC_Os03g60820	Os.6533.1.S1_at	11/11	3	+	34493583..34499758	sugar transporter family protein, putative, expressed
LOC_Os03g60820	Os.5150.1.S1_at	10/11	3	+	34493583..34499758	sugar transporter family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008168	molecular_function	methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.37217.2.S1_at--525--349	1	Chr03:34470143..34470167 (25 bp)	CATGGTCTGTGAAGGTTTACGGTAG	LOC_Os03g60750
Os.37217.2.S1_at--381--953	1	Chr03:34470206..34470230 (25 bp)	TCTTTGTTGAACTGATTTGATTAGC	LOC_Os03g60750
Os.37217.2.S1_at--263--1003	1	Chr03:34470227..34470251 (25 bp)	TAGCAATTTTTCTTGTGCACCCCTG	LOC_Os03g60750
Os.37217.2.S1_at--481--313	1	Chr03:34470231..34470255 (25 bp)	AATTTTTCTTGTGCACCCCTGTCGC	LOC_Os03g60750
Os.37217.2.S1_at--623--723	1	Chr03:34470251..34470275 (25 bp)	GTCGCCACACTTTCAGGCCTTGGTA	LOC_Os03g60750
Os.37217.2.S1_at--230--349	1	Chr03:34470264..34470288 (25 bp)	CAGGCCTTGGTATCAGGCAAGCAGT	LOC_Os03g60750
Os.37217.2.S1_at--1080--821	1	Chr03:34470279..34470303 (25 bp)	GGCAAGCAGTGTATACTTTTCCGGT	LOC_Os03g60750
Os.37217.2.S1_at--592--501	1	Chr03:34470284..34470308 (25 bp)	GCAGTGTATACTTTTCCGGTAATCT	LOC_Os03g60750
Os.37217.2.S1_at--207--367	1	Chr03:34470307..34470331 (25 bp)	CTTTTCAAGAAAGGCCATTTGCTAA	LOC_Os03g60750
Os.37217.2.S1_at--605--29	1	Chr03:34470332..34470356 (25 bp)	ATAGAAAAGCATGAAGCCCGTTCAT	LOC_Os03g60750
Os.37217.2.S1_at--609--499	1	Chr03:34470340..34470364 (25 bp)	GCATGAAGCCCGTTCATGAACAATC	LOC_Os03g60750

Target Sequence

CATGGTCTGTGAAGGTTTACGGTAGAAATAATAGAATGAAGAAGCNGTGCTGACACATTTGAATCTTTGTTGAACTGATT
TGATTAGCAATTTTTCTTGTGCACCCCTGTCGCCACACTTTCAGGCCTTGGTATCAGGCAAGCAGTGTATACTTTTCCGG
TAATCTTTTCAAGAAAGGCCATTTGCTAAATAGAAAAGCATGAAGCCCGTTCATGAACAATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis