Browse Element(s) Details

Os.26905.2.S1_x_at

Description

gb:NM_185161.1
DB_XREF= gi:34897407
TID=Os.26905.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0081B07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0081B07.17), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g60800	11/11	hAT family dimerisation domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g60730	Os.14508.1.S1_at	11/11	3	+	34460682..34464908	BED zinc finger family protein, expressed
LOC_Os03g60730	Os.14508.2.S1_x_at	11/11	3	+	34460682..34464908	BED zinc finger family protein, expressed
LOC_Os03g60740	Os.17911.1.S1_at	11/11	3	+	34465420..34468030	expressed protein
LOC_Os03g60750	Os.37217.2.S1_at	11/11	3	+	34468139..34470365	FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760	Os.37217.1.S1_at	11/11	3	+	34472116..34472762	expressed protein
LOC_Os03g60780	Os.6349.1.S1_a_at	11/11	3	+	34475214..34478234	Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790	Os.33670.3.S1_s_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.2.S1_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.1.S1_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60790	Os.33670.3.S1_x_at	11/11	3	+	34478451..34480250	DnaJ domain containing protein, expressed
LOC_Os03g60800	Os.26905.2.S1_x_at	11/11	3	+	34480491..34484229	hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800	Os.26905.1.A1_at	9/11	3	+	34480491..34484229	hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810	Os.44937.1.S1_at	11/11	3	+	34484417..34486932	Protein kinase domain containing protein, expressed
LOC_Os03g60820	Os.6533.1.S1_at	11/11	3	+	34493583..34499758	sugar transporter family protein, putative, expressed
LOC_Os03g60820	Os.5150.1.S1_at	10/11	3	+	34493583..34499758	sugar transporter family protein, putative, expressed
LOC_Os03g60830	Os.35344.3.S1_x_at	6/11	3	+	34502382..34503607	hypothetical protein
LOC_Os03g60830	Os.35344.18.S1_x_at	5/11	3	+	34502382..34503607	hypothetical protein
LOC_Os03g60830	OsAffx.22940.5.S1_x_at	3/11	3	+	34502382..34503607	hypothetical protein
LOC_Os03g60840	Os.7612.1.S1_at	10/11	3	+	34506004..34507021	Bowman-Birk serine protease inhibitor family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26905.2.S1_x_at--28--653	1	Chr03:34482931..34482955 (25 bp)	GATTTTCGTAGGCAAATGGCTATCC	LOC_Os03g60800
Os.26905.2.S1_x_at--39--831	1	Chr03:34482948..34482972 (25 bp)	GGCTATCCGAGCCAGGCACACTTTA	LOC_Os03g60800
Os.26905.2.S1_x_at--956--203	1	Chr03:34482967..34483217 (25 bp)	ACTTTACCTCCTGCTGAATGGTGGT	LOC_Os03g60800
Os.26905.2.S1_x_at--683--591	1	Chr03:34483230..34483254 (25 bp)	GAGCTTGCCCAAATTTGACGCGTTT	LOC_Os03g60800
Os.26905.2.S1_x_at--371--1045	1	Chr03:34483253..34483277 (25 bp)	TTAGCAGTTCGCATTCTCAGTCAAA	LOC_Os03g60800
Os.26905.2.S1_x_at--793--11	1	Chr03:34483265..34483289 (25 bp)	ATTCTCAGTCAAACCTGCAGTGCTA	LOC_Os03g60800
Os.26905.2.S1_x_at--414--583	1	Chr03:34483298..34483322 (25 bp)	GACCGGAGACACATTTCTTTCGAAC	LOC_Os03g60800
Os.26905.2.S1_x_at--1009--899	1	Chr03:34483341..34483365 (25 bp)	TGAATCTTTTTGAACGCCAGCGAAT	LOC_Os03g60800
Os.26905.2.S1_x_at--142--65	1	Chr03:34483364..34483388 (25 bp)	ATGCATCATCTCACATTTGTTCAGT	LOC_Os03g60800
Os.26905.2.S1_x_at--392--235	1	Chr03:34483516..34483540 (25 bp)	AAAGCATTTGATCCTGTCTCAGTCG	LOC_Os03g60800
Os.26905.2.S1_x_at--693--641	1	Chr03:34483577..34483601 (25 bp)	GATCTGCACTTATATCTGGCCAGGC	LOC_Os03g60800

Target Sequence

GATTTTCGTAGGCAAATGGCTATCCGAGCCAGGCACACTTTACCTCCTGCTGAATGGTGGTATACGTATGGAGGAGCTTG
CCCAAATTTGACGCGTTTAGCAGTTCGCATTCTCAGTCAAACCTGCAGTGCTAAAGGATGTGACCGGAGACACATTTCTT
TCGAACAAATTCATGACCAAAGAATGAATCTTTTTGAACGCCAGCGAATGCATCATCTCACATTTGTTCAGTACAATCTA
AGGCTACAACACAGGCAACAACACAAGACCAAAGCATTTGATCCTGTCTCAGTCGACAACATTGACATAGTCGACGATTG
GGTTGTGGATAGATCTGCACTTATATCTGGCCAGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis