Browse Element(s) Details


Os.26905.1.A1_at

Description gb:AK099787.1
DB_XREF= gi:32984996
TID=Os.26905.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0081B07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096O21, full insert sequence.
FL= gb:AK099787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g608009/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein
LOC_Os03g60840Os.7612.1.S1_at10/113+34506004..34507021Bowman-Birk serine protease inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26905.1.A1_at--208--2791Chr03:34483849..34483873 (25 bp)
AAGAGAGCCGTCACCTGTGCTTATA
LOC_Os03g60800
Os.26905.1.A1_at--550--3891Chr03:34483863..34483887 (25 bp)
CTGTGCTTATAGGTGGAGTCATTAC
LOC_Os03g60800
Os.26905.1.A1_at--5--7051Chr03:34483928..34483952 (25 bp)
GTAAACTAATGTTGCATGGAGCCAT
LOC_Os03g60800
Os.26905.1.A1_at--457--10291Chr03:34484006..34484030 (25 bp)
TTTCCTCGGCAACCAATCTAATGTC
LOC_Os03g60800
Os.26905.1.A1_at--676--5551Chr03:34484048..34484072 (25 bp)
GAAAGCCCGTTCAGTTCTCGTATGA
LOC_Os03g60800
Os.26905.1.A1_at--137--5471Chr03:34484101..34484125 (25 bp)
GAACTGTCTCCATTTGTTGTCATCT
LOC_Os03g60800
Os.26905.1.A1_at--2--451Chr03:34484122..34484146 (25 bp)
ATCTTTTTGTTTGATACCTTGCTAA
LOC_Os03g60800
Os.26905.1.A1_at--24--1751Chr03:34484137..34484161 (25 bp)
ACCTTGCTAATATTTGTCATGTTCA
LOC_Os03g60800
Os.26905.1.A1_at--375--5051Chr03:34484177..34484201 (25 bp)
GCAGAACATTAGGACAGCATTTTTT
LOC_Os03g60800
Os.26905.1.A1_at--367--10331Chr03:34484207..34484231 (25 bp)
TTTCATTGTCTTTTTCCCATGATGA
NONE
Os.26905.1.A1_at--886--10291Chr03:34484219..34484243 (25 bp)
TTTCCCATGATGAGAAGCAGGCTGC
NONE
Target Sequence 
AAGAGAGCCGTCACCTGTGCTTATAGGTGGAGTCATTACGATTGGGTAGTAGGGATGCTAGTTTTAGCTTGGATAGGATG
TAAACTAATGTTGCATGGAGCCATGGACACAATCTGGCATTGCTTGTCAGTTGTCAACATTNTGNAAGTAGTTCTTTTTT
CCTCGGCAACCAATCTAATGTCNNNNGNTTGGAACACAAGAAAGCCCGTTCAGTTCTCGTATGAATCAGAAGAATCCCTA
GAACCANNNNNNGAACTGTCTCCATTTGTTGTCATCTTTTTGTTTGATACCTTGCTAATATTTGTCATGTTCATCTTTTG
TTGTAAAAGCAGAACATTAGGACAGCATTTTTTTAGGTTTTCATTGTCTTTTTCCCATGATGAGAAGCAGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26905.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis