Browse Element(s) Details


Os.33670.3.S1_s_at

Description gb:NM_185162.1
DB_XREF= gi:34897409
GEN=OSJNBb0081B07.18
TID=Os.33670.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33670 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DnaJ homolog subfamily protein (OSJNBb0081B07.18), mRNA.
PROD=putative DnaJ homolog subfamily protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5986011/11hypothetical protein
LOC_Os03g6079011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59820NANA3+34000254..34001240hypothetical protein
LOC_Os03g59830OsAffx.13554.1.S1_at11/113+34008049..34008483hypothetical protein
LOC_Os03g59840OsAffx.25775.1.S1_at11/113+34009356..34012621hypothetical protein
LOC_Os03g59840Os.29893.1.S1_at1/113+34009356..34012621hypothetical protein
LOC_Os03g59850OsAffx.3647.1.S1_at10/113+34013330..34014930hypothetical protein
LOC_Os03g59860Os.33670.3.S1_s_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860OsAffx.25776.1.S1_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.1.S1_at4/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.3.S1_x_at2/113+34016196..34018133hypothetical protein
LOC_Os03g59870OsAffx.3648.1.S1_x_at11/113+34020617..34021240EF hand family protein
LOC_Os03g59874NANA3+34024640..34025166hypothetical protein
LOC_Os03g59880OsAffx.25777.1.S1_at11/113+34027920..34028721expressed protein
LOC_Os03g59894Os.38395.4.S1_x_at3/113+34032264..34035601Transposable element protein, putative, MuDR
LOC_Os03g59910NANA3+34037206..34037611hypothetical protein
LOC_Os03g59920Os.45173.1.S1_x_at2/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.10731.2.A1_at1/113+34038495..34040127transposon protein, putative, unclassified
LOC_Os03g59920Os.38764.1.S1_x_at1/113+34038495..34040127transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33670.3.S1_s_at--650--3112Chr03:34479370..34479394 (25 bp)
AATTTCAGAACTGGGAAGCCGGTCT
LOC_Os03g60790
Os.33670.3.S1_s_at--971--1932Chr03:34479379..34479403 (25 bp)
ACTGGGAAGCCGGTCTGAATTCAGA
LOC_Os03g60790
Os.33670.3.S1_s_at--1053--5412Chr03:34479384..34479408 (25 bp)
GAAGCCGGTCTGAATTCAGAACAGA
LOC_Os03g60790
Os.33670.3.S1_s_at--376--10532Chr03:34479398..34479422 (25 bp)
TTCAGAACAGAAACCTAAAAGCTTG
LOC_Os03g60790
Os.33670.3.S1_s_at--505--3272Chr03:34479405..34479429 (25 bp)
CAGAAACCTAAAAGCTTGTGGGAAG
LOC_Os03g60790
Os.33670.3.S1_s_at--1036--8452Chr03:34479421..34479601 (25 bp)
TGTGGGAAGAGTTGGCAGCCATTGG
LOC_Os03g60790
Os.33670.3.S1_s_at--251--2192Chr03:34479682..34479706 (25 bp)
ACACACAGTCTGGAGGCAAAAACAA
LOC_Os03g60790
Os.33670.3.S1_s_at--656--2132Chr03:34479686..34479710 (25 bp)
ACAGTCTGGAGGCAAAAACAAGCAA
LOC_Os03g60790
Os.33670.3.S1_s_at--298--9752Chr03:34479716..34479740 (25 bp)
TAATACATCGACAAGTAGCTTTGAT
LOC_Os03g60790
Os.33670.3.S1_s_at--89--6972Chr03:34479730..34479754 (25 bp)
GTAGCTTTGATGATAGCGTATCTGA
LOC_Os03g60790
Os.33670.3.S1_s_at--86--4892Chr03:34479733..34479757 (25 bp)
GCTTTGATGATAGCGTATCTGAGAT
LOC_Os03g60790
Target Sequence 
AATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAA
GAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACAC
ACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33670.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis