Browse Element(s) Details


OsAffx.13554.1.S1_at

Description tigr:9631.m05890
TID=OsAffx.13554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59780NANA3+33985215..33985823hypothetical protein
LOC_Os03g59790OsAffx.3648.1.S1_x_at11/113+33989380..33989982EF hand family protein
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59820NANA3+34000254..34001240hypothetical protein
LOC_Os03g59830OsAffx.13554.1.S1_at11/113+34008049..34008483hypothetical protein
LOC_Os03g59840OsAffx.25775.1.S1_at11/113+34009356..34012621hypothetical protein
LOC_Os03g59840Os.29893.1.S1_at1/113+34009356..34012621hypothetical protein
LOC_Os03g59850OsAffx.3647.1.S1_at10/113+34013330..34014930hypothetical protein
LOC_Os03g59860Os.33670.3.S1_s_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860OsAffx.25776.1.S1_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.1.S1_at4/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.3.S1_x_at2/113+34016196..34018133hypothetical protein
LOC_Os03g59870OsAffx.3648.1.S1_x_at11/113+34020617..34021240EF hand family protein
LOC_Os03g59874NANA3+34024640..34025166hypothetical protein
LOC_Os03g59880OsAffx.25777.1.S1_at11/113+34027920..34028721expressed protein
LOC_Os03g59894Os.38395.4.S1_x_at3/113+34032264..34035601Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13554.1.S1_at--1072--931Chr03:34008091..34008115 (25 bp)
AGGACGCGAAACTCTTGGCGGTCGA
LOC_Os03g59830
OsAffx.13554.1.S1_at--819--4071Chr03:34008122..34008146 (25 bp)
CGAGATGGCGGCTGCTTGCATTGCA
LOC_Os03g59830
OsAffx.13554.1.S1_at--1130--4931Chr03:34008139..34008163 (25 bp)
GCATTGCAGGGACCTGTTGTGCTCA
LOC_Os03g59830
OsAffx.13554.1.S1_at--192--1771Chr03:34008150..34008174 (25 bp)
ACCTGTTGTGCTCAGTCGCGCCGAG
LOC_Os03g59830
OsAffx.13554.1.S1_at--984--2791Chr03:34008268..34008292 (25 bp)
AAGATGCAGCGCCTGCCGCCTTGTC
LOC_Os03g59830
OsAffx.13554.1.S1_at--1101--4431Chr03:34008285..34008309 (25 bp)
GCCTTGTCGCATCCTATCTCAAGAG
LOC_Os03g59830
OsAffx.13554.1.S1_at--245--7231Chr03:34008290..34008314 (25 bp)
GTCGCATCCTATCTCAAGAGCTCGA
LOC_Os03g59830
OsAffx.13554.1.S1_at--1113--5751Chr03:34008313..34008337 (25 bp)
GACGTGCTCGTCGAACTCGATCGAG
LOC_Os03g59830
OsAffx.13554.1.S1_at--330--9351Chr03:34008323..34008347 (25 bp)
TCGAACTCGATCGAGCAGGCGGACC
LOC_Os03g59830
OsAffx.13554.1.S1_at--1088--3351Chr03:34008354..34008378 (25 bp)
CACCGATCAGGCCACGGCTAGAATG
LOC_Os03g59830
OsAffx.13554.1.S1_at--37--891Chr03:34008362..34008386 (25 bp)
AGGCCACGGCTAGAATGGCGCAGCC
LOC_Os03g59830
Target Sequence 
AGGACGCGAAACTCTTGGCGGTCGACCTCGCCGAGATGGCGGCTGCTTGCATTGCAGGGACCTGTTGTGCTCAGTCGCGC
CGAGCCGCCAACGCACGGCCTATTCGCTCGCTCGCTGGCCTTGTTCGCCGACCTGCACGGGGTGCGCGGCGGCGAGGAAT
TGGATCGAAAGGCGCGGAAGATGCAGCGCCTGCCGCCTTGTCGCATCCTATCTCAAGAGCTCGACGTGCTCGTCGAACTC
GATCGAGCAGGCGGACCTGCGCGCACCGATCAGGCCACGGCTAGAATGGCGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis