Browse Element(s) Details


OsAffx.25775.1.S1_at

Description tigr:9631.m05891
TID=OsAffx.25775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative prohibitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59780NANA3+33985215..33985823hypothetical protein
LOC_Os03g59790OsAffx.3648.1.S1_x_at11/113+33989380..33989982EF hand family protein
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59820NANA3+34000254..34001240hypothetical protein
LOC_Os03g59830OsAffx.13554.1.S1_at11/113+34008049..34008483hypothetical protein
LOC_Os03g59840OsAffx.25775.1.S1_at11/113+34009356..34012621hypothetical protein
LOC_Os03g59840Os.29893.1.S1_at1/113+34009356..34012621hypothetical protein
LOC_Os03g59850OsAffx.3647.1.S1_at10/113+34013330..34014930hypothetical protein
LOC_Os03g59860Os.33670.3.S1_s_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860OsAffx.25776.1.S1_at11/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.1.S1_at4/113+34016196..34018133hypothetical protein
LOC_Os03g59860Os.33670.3.S1_x_at2/113+34016196..34018133hypothetical protein
LOC_Os03g59870OsAffx.3648.1.S1_x_at11/113+34020617..34021240EF hand family protein
LOC_Os03g59874NANA3+34024640..34025166hypothetical protein
LOC_Os03g59880OsAffx.25777.1.S1_at11/113+34027920..34028721expressed protein
LOC_Os03g59894Os.38395.4.S1_x_at3/113+34032264..34035601Transposable element protein, putative, MuDR
LOC_Os03g59910NANA3+34037206..34037611hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25775.1.S1_at--998--1371Chr03:34010889..34010913 (25 bp)
AGACCTGGTCTTGGTGTCCTTACAA
LOC_Os03g59840
OsAffx.25775.1.S1_at--495--8691Chr03:34010875..34010899 (25 bp)
TGTCCTTACAAGACCATTACCAACT
LOC_Os03g59840
OsAffx.25775.1.S1_at--110--9991Chr03:34010858..34010882 (25 bp)
TACCAACTAAGTACAGATCCCTGGG
LOC_Os03g59840
OsAffx.25775.1.S1_at--832--6011Chr03:34010818..34010842 (25 bp)
GAGAGTTTTGACTTCACTTATGCAT
LOC_Os03g59840
OsAffx.25775.1.S1_at--214--7031Chr03:34010767..34010791 (25 bp)
GTACAATGCCAGTCAGCTTATCATA
LOC_Os03g59840
OsAffx.25775.1.S1_at--294--1171Chr03:34010758..34010781 (24 bp)
AGTCAGCTTATCATACCCAGAGAAA
LOC_Os03g59840
OsAffx.25775.1.S1_at--751--7131Chr03:34010385..34010575 (25 bp)
GTCATTACAGAACAGGCCTGCTTGA
LOC_Os03g59840
OsAffx.25775.1.S1_at--217--3731Chr03:34010349..34010373 (25 bp)
CTAAGAGTGCATTGGTCGAGCCTGC
LOC_Os03g59840
OsAffx.25775.1.S1_at--623--31Chr03:34010339..34010363 (25 bp)
ATTGGTCGAGCCTGCAACTAGAAGA
LOC_Os03g59840
OsAffx.25775.1.S1_at--227--2771Chr03:34010312..34010336 (25 bp)
AAGAGCTCGGGATCTTTGAGAAGGT
LOC_Os03g59840
OsAffx.25775.1.S1_at--487--8751Chr03:34009463..34009486 (24 bp)
TGTAGTAGTTGGCTATTGCAGGTTA
LOC_Os03g59840
Target Sequence 
AGACCTGGTCTTGGTGTCCTTACAAGACCATTACCAACTAAGTACAGATCCCTGGGGGATAATTTCTGTGAGAGAGTTTT
GACTTCACTTATGCATGAAACACTCAAAGCGGTGGTTGCACAGTACAATGCCAGTCAGCTTATCATACCCAGAGAAAGCT
TTAGAAAAGAGTTCACTCATGCAATTGAAACCAAGCAGGTCGATGAACAAGAAGCTCAGCGTGCAAAGTTCATTGTTGAG
AAGGCTGAACAACATAAGAGGAAGGCAGTCATTACAGAACAGGCCTGCTTGAACAGGGTGAAGCTAAGAGTGCATTGGTC
GAGCCTGCAACTAGAAGAAGAAGAGCTCGGGATCTTTGAGAAGGTCCAGGAAGTAGAAGTATCAAAAGAATTTGGATGTA
GTAGTTGGCTATTGCAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis