Browse Element(s) Details


Os.29893.1.S1_at

Description gb:AK109694.1
DB_XREF= gi:32994903
TID=Os.29893.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1111_B11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E10, full insert sequence.
FL= gb:AK109694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6107010/11expressed protein
LOC_Os03g598401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0031225cellular_componentanchored to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29893.1.S1_at--987--2851Chr03:34633968..34633992 (25 bp)
AAGTGATCCTGGGTGCGCGCCGAGA
LOC_Os03g61070
Os.29893.1.S1_at--319--9991Chr03:34633880..34633904 (25 bp)
TACCACGCTGAGTTGGGTGCGGAGC
LOC_Os03g61070
Os.29893.1.S1_at--53--7011Chr03:34633835..34633859 (25 bp)
GTACACCCCGGAGCGCGAAGACGAT
LOC_Os03g61070
Os.29893.1.S1_at--910--1391Chr03:34633817..34633841 (25 bp)
AGACGATGCGGGAAGCGGTCCTGCA
LOC_Os03g61070
Os.29893.1.S1_at--165--4151NONE
CGCCGTACCTGGAGGTCCAGGAAGT
NONE
Os.29893.1.S1_at--447--812Chr03:34632040..34632064 (25 bp)
ATGGTGGGTCATTTTTTGTAGCAGA
LOC_Os03g61070
Os.29893.1.S1_at--1028--2771Chr03:34631996..34632020 (25 bp)
AAGAGTTTGATGTCTAATTCGACGT
LOC_Os03g61070
Os.29893.1.S1_at--1019--7151Chr03:34631985..34632009 (25 bp)
GTCTAATTCGACGTGGTTCTTTTCT
LOC_Os03g61070
Os.29893.1.S1_at--916--7891Chr03:34631971..34631995 (25 bp)
GGTTCTTTTCTTTTCAGTACTCAGT
LOC_Os03g61070
Os.29893.1.S1_at--326--7011Chr03:34631955..34631979 (25 bp)
GTACTCAGTAGTAGTCGGCTATTGC
LOC_Os03g61070
Os.29893.1.S1_at--443--1171Chr03:34631949..34631973 (25 bp)
AGTAGTAGTCGGCTATTGCAGATTA
LOC_Os03g61070
Target Sequence 
AAGTGATCCTGGGTGCGCGCCGAGAGCGCACCGTCCTCGCCGCCGATGACCCCGCCTCGCCGTACAACGAGCCGAGGGTG
GCCGCGGCTACCACGCTGAGTTGGGTGCGGAGCGCGGGTGCAGGGGCGCTGTGGTACACCCCGGAGCGCGAAGACGATGC
GGGAAGCGGTCCTGCAGGCGCCGGCCCATGACCCCGCCTCGCCGTACCTGGAGGTCCAGGAAGTAGAAGTATCAAAAGAA
TTTGGATGGTGGGTCATTTTTTGTAGCAGAGGAAGTAGAAAATTCAGAGAAGAGTTTGATGTCTAATTCGACGTGGTTCT
TTTCTTTTCAGTACTCAGTAGTAGTCGGCTATTGCAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis