Browse Element(s) Details


Os.32832.1.S1_a_at

Description gb:AK072216.1
DB_XREF= gi:32982239
TID=Os.32832.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OJ1111_B11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168J03, full insert sequence.
FL= gb:AK102693.1 gb:AK072216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6101011/11TPR-containing protein kinase, putative, expressed
LOC_Os12g377601/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32832.1.S1_a_at--890--2971Chr03:34606587..34606611 (25 bp)
AATGGTGTCTCCGACTATGCTGGCA
LOC_Os03g61010
Os.32832.1.S1_a_at--109--6851Chr03:34606619..34606643 (25 bp)
GTTTCGTATACATGGTGCTCGGCAA
LOC_Os03g61010
Os.32832.1.S1_a_at--181--5052Chr12:23150863..23150882 (20 bp)
GCAGACATATCTCCTGAGTGGCCTA
LOC_Os12g37760
Os.32832.1.S1_a_at--787--3711Chr03:34606700..34606724 (25 bp)
CTACTGCACACTACCTTCAAGGGAT
LOC_Os03g61010
Os.32832.1.S1_a_at--322--5191Chr03:34606773..34606797 (25 bp)
GCAAGGCGCCGCTTTGGAAGCTGAA
LOC_Os03g61010
Os.32832.1.S1_a_at--868--2391Chr03:34606833..34606857 (25 bp)
AAACATGATGTGATGCCTCCTCTCT
LOC_Os03g61010
Os.32832.1.S1_a_at--51--10051Chr03:34606866..34606890 (25 bp)
TAGATCGCCTGCATTTTGGGTGTCC
LOC_Os03g61010
Os.32832.1.S1_a_at--84--1131Chr03:34606894..34606918 (25 bp)
AGTGCTTTGCCACCAATAGGGCTGT
LOC_Os03g61010
Os.32832.1.S1_a_at--86--10411Chr03:34606920..34606944 (25 bp)
TTTTGGTCTTCCCTAACTTGTATTG
LOC_Os03g61010
Os.32832.1.S1_a_at--228--10291Chr03:34606948..34606972 (25 bp)
TTTCCAGTGGTTTTACAACTCCTAG
LOC_Os03g61010
Os.32832.1.S1_a_at--33--8351Chr03:34606976..34607000 (25 bp)
GGCTGTTATGACACCTCCAATATAT
LOC_Os03g61010
Target Sequence 
AATGGTGTCTCCGACTATGCTGGCACGACGAAGTTTCGTATACATGGTGCTCGGCAAGCTGCAAGAAGGCCTTGCGGATG
CAAAGAAAGCAGCAGACATATCTCCTGAGTGGCCTACTGCACACTACCTTCAAGGGATGGCATATCTCGCCATGGGAATG
GAGCCTGAAGGGCATGAAGAACTCAAGCAAGGCGCCGCTTTGGAAGCTGAAAGGAATGCTAGATAGAGATGAACTGTATA
GCCCTCAAACATGATGTGATGCCTCCTCTCTTCTGTACCTAGATCGCCTGCATTTTGGGTGTCCTCCAGTGCTTTGCCAC
CAATAGGGCTGTTTTTTGGTCTTCCCTAACTTGTATTGGTATTTCCAGTGGTTTTACAACTCCTAGGTTGGCTGTTATGA
CACCTCCAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32832.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis