Browse Element(s) Details


Os.36472.1.S1_x_at

Description gb:AK121566.1
DB_XREF= gi:37991189
TID=Os.36472.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1111_B11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034N15, full insert sequence.
FL= gb:AK121566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36472.1.S1_x_at--685--7031Chr03:34614752..34614776 (25 bp)
GTACACGCAGTTCCGCGACATGCGG
LOC_Os03g61040
Os.36472.1.S1_x_at--1039--1751Chr03:34614516..34614540 (25 bp)
ACCTGCTGGCGTTCGCGCTCGAGAC
LOC_Os03g61040
Os.36472.1.S1_x_at--452--1191Chr03:34614456..34614480 (25 bp)
AGTTCCACCCGGATTACATGGAGAG
LOC_Os03g61040
Os.36472.1.S1_x_at--1014--1791Chr03:34614450..34614474 (25 bp)
ACCCGGATTACATGGAGAGCGTCGC
LOC_Os03g61040
Os.36472.1.S1_x_at--573--7531Chr03:34614312..34614336 (25 bp)
GTGGCCGACCGTGACAGGATACGCA
LOC_Os03g61040
Os.36472.1.S1_x_at--183--6491Chr03:34614295..34614319 (25 bp)
GATACGCAATGCACGGATCGCCTCT
LOC_Os03g61040
Os.36472.1.S1_x_at--189--6391Chr03:34614280..34614304 (25 bp)
GATCGCCTCTTCCTTAGCTGGAGTA
LOC_Os03g61040
Os.36472.1.S1_x_at--329--4451Chr03:34614276..34614300 (25 bp)
GCCTCTTCCTTAGCTGGAGTAGTTG
LOC_Os03g61040
Os.36472.1.S1_x_at--1121--5171Chr03:34614241..34614265 (25 bp)
GCAAGTGTTGTAGTAGTAGCTGCTT
LOC_Os03g61040
Os.36472.1.S1_x_at--398--6971Chr03:34614226..34614250 (25 bp)
GTAGCTGCTTAATTACATGTGTAAT
LOC_Os03g61040
Os.36472.1.S1_x_at--702--7071Chr03:34614206..34614230 (25 bp)
GTAATAGACTTGGATTACTCCAGAA
LOC_Os03g61040
Target Sequence 
GTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCT
ACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGNAGGGCG
GTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCT
GCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGA
GCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAAT
GGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCT
CTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGA
TTACTCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36472.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis