Browse Element(s) Details


Os.22563.1.S1_at

Description gb:AK058472.1
DB_XREF= gi:32968490
TID=Os.22563.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OJ1111_B11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B11, full insert sequence.
FL= gb:AK058472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6103010/11KOW motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22563.1.S1_at--526--2011Chr03:34612296..34612320 (25 bp)
ACTCTTCAGTTGACACTTTTTGGGA
LOC_Os03g61030
Os.22563.1.S1_at--8--2851Chr03:34612997..34613021 (25 bp)
AAGTCTTGCGGATCATTAGCTTTGA
LOC_Os03g61030
Os.22563.1.S1_at--184--2571Chr03:34613093..34613117 (25 bp)
AACTGTTAGCATACGGGCTACCTCA
LOC_Os03g61030
Os.22563.1.S1_at--733--7571Chr03:34613107..34613129 (23 bp)
GGGCTACCTCAAGAACTGACCTGAG
LOC_Os03g61030
Os.22563.1.S1_at--1115--3851Chr03:34613122..34613245 (25 bp)
CTGACCTGAGTTACATGACCACATG
LOC_Os03g61030
Os.22563.1.S1_at--85--3531Chr03:34613242..34613266 (25 bp)
CATGAGGGCTAGATTTGTCGGACAA
LOC_Os03g61030
Os.22563.1.S1_at--475--8911Chr03:34613417..34613441 (25 bp)
TGAGCATTTAGATCCCCAGTGTCAC
LOC_Os03g61030
Os.22563.1.S1_at--601--1111Chr03:34613434..34613458 (25 bp)
AGTGTCACTTCACCATGTGTATTAG
LOC_Os03g61030
Os.22563.1.S1_at--489--6871Chr03:34613452..34613476 (25 bp)
GTATTAGGCTATCTTCGTGTTCCAC
LOC_Os03g61030
Os.22563.1.S1_at--137--10571Chr03:34613486..34613510 (25 bp)
TTCTTTGTTGATTCCTTAGCTACGA
LOC_Os03g61030
Os.22563.1.S1_at--765--3651NONE
CTTAGCTACGAGATCCCTTTGGAGA
NONE
Target Sequence 
ACTCTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATG
GTGAAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCAT
TTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATG
AGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAG
GCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATNCANTAAAAGAAGAACAATTCTTTGCACAAGGG
TTTTGTTNTTATGAGCATTTAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTCT
TTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis