Browse Element(s) Details


Os.10437.1.S1_at

Description gb:AK067902.1
DB_XREF= gi:32977920
TID=Os.10437.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dex1 protein (OJ1111_B11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121O19, full insert sequence.
FL= gb:AK067902.1 gb:AK104830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6105011/11defective in exine formation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010208biological_processpollen wall formation
GO:0016020cellular_componentmembrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10437.1.S1_at--275--2391Chr03:34626342..34626366 (25 bp)
AAACGGGTTCTACTTCTCTGACGAG
LOC_Os03g61050
Os.10437.1.S1_at--527--1551Chr03:34626398..34626422 (25 bp)
AGCTTCTGAAATGGCTCGTGCTTCT
LOC_Os03g61050
Os.10437.1.S1_at--992--7311Chr03:34626415..34626439 (25 bp)
GTGCTTCTTCCAATGCTTGGGATGT
LOC_Os03g61050
Os.10437.1.S1_at--86--751Chr03:34626436..34626460 (25 bp)
ATGTTTAGCGTTCTTGTCATCCTGC
LOC_Os03g61050
Os.10437.1.S1_at--547--1471Chr03:34626468..34626492 (25 bp)
AGAAGGCGCTCCGTTGCCATCATTT
LOC_Os03g61050
Os.10437.1.S1_at--987--1891Chr03:34626527..34626551 (25 bp)
ACGTCAGGTCCTCATAGAAGCAGAT
LOC_Os03g61050
Os.10437.1.S1_at--898--5011Chr03:34626570..34626594 (25 bp)
GCAGGATATCCAATCACCCATGAAG
LOC_Os03g61050
Os.10437.1.S1_at--1082--2911Chr03:34626592..34626616 (25 bp)
AAGGAGCTTGTCCACATCATACTGC
LOC_Os03g61050
Os.10437.1.S1_at--203--5511Chr03:34626639..34626663 (25 bp)
GAAAAAACCCCTCACGATGCTGCAT
LOC_Os03g61050
Os.10437.1.S1_at--1162--4971Chr03:34626660..34626684 (25 bp)
GCATCCCATCAGTTAGCTAGTTCGG
LOC_Os03g61050
Os.10437.1.S1_at--912--5331Chr03:34626685..34626709 (25 bp)
GAAGTACAGCTTTTAGTCATGCAAA
LOC_Os03g61050
Target Sequence 
AAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCTGAAATGGCTCGTGCTTC
TTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAAT
ATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCA
ATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGC
ATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis