Browse Element(s) Details


Os.9885.1.S1_x_at

Description gb:AK121165.1
DB_XREF= gi:37990788
TID=Os.9885.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1111_B11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080J02, full insert sequence.
FL= gb:AK121165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6109010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9885.1.S1_x_at--1105--411Chr03:34645988..34646012 (25 bp)
ATCATCGTCGCGTGAGAGAGAGCTA
LOC_Os03g61090
Os.9885.1.S1_x_at--21--4851Chr03:34646020..34646044 (25 bp)
GCTAAGAATCATGGCTTCGGTGGGA
LOC_Os03g61090
Os.9885.1.S1_x_at--636--4531Chr03:34646366..34646390 (25 bp)
GCCCTCTTCGCCAAGAAAGGCTGAA
LOC_Os03g61090
Os.9885.1.S1_x_at--783--4311Chr03:34646394..34646418 (25 bp)
TCCTTTCGAATTCTACGTACGTATA
LOC_Os03g61090
Os.9885.1.S1_x_at--780--6871Chr03:34646414..34646438 (25 bp)
GTATATACTCCAACGCAGAGCGTCA
LOC_Os03g61090
Os.9885.1.S1_x_at--738--1371Chr03:34646430..34646454 (25 bp)
AGAGCGTCAGCTTGCCTACACGATC
LOC_Os03g61090
Os.9885.1.S1_x_at--224--9871Chr03:34646446..34646470 (25 bp)
TACACGATCGATGTATTACCCTCCT
LOC_Os03g61090
Os.9885.1.S1_x_at--1107--6851Chr03:34646483..34646507 (25 bp)
GTTTGATTCAAACTCCAAGCTTAAT
LOC_Os03g61090
Os.9885.1.S1_x_at--434--10231Chr03:34646507..34646531 (25 bp)
TTTGGAGGATGATTTGCGTATACGT
LOC_Os03g61090
Os.9885.1.S1_x_at--676--4631Chr03:34646522..34646546 (25 bp)
GCGTATACGTAGCAACATGTGAGGT
LOC_Os03g61090
Os.9885.1.S1_x_at--553--10311NONE
TTTCTTTTCAACTCAACATGGGTGA
NONE
Target Sequence 
ATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGC
CGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGG
CTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCA
ACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTC
AGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATG
ATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTC
ATACAACACACATCATTTGTTATTTCTTTTCAACTCAACATGGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9885.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis