Browse Element(s) Details


Os.17682.1.S1_at

Description gb:AK071165.1
DB_XREF= gi:32981188
TID=Os.17682.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0010E04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081M24, full insert sequence.
FL= gb:AK071165.1 gb:AK104387.1 gb:AK104778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17682.1.S1_at--119--9211Chr03:34667806..34667830 (25 bp)
TGCCAGTACAGCCATCACGAACAAA
LOC_Os03g61140
Os.17682.1.S1_at--656--3211Chr03:34667691..34667715 (25 bp)
CAAGTGCCTGTTAAGTTTCCCATTT
LOC_Os03g61140
Os.17682.1.S1_at--1039--3131Chr03:34667644..34667668 (25 bp)
AATTGGCAAGGACCAGTCCCTCTTC
LOC_Os03g61140
Os.17682.1.S1_at--357--1151Chr03:34667630..34667654 (25 bp)
AGTCCCTCTTCTTCGAAGAATGCGA
LOC_Os03g61140
Os.17682.1.S1_at--863--8511Chr03:34667594..34667618 (25 bp)
TGGAAGTACAGCATCTGGGCGCTCT
LOC_Os03g61140
Os.17682.1.S1_at--973--8651Chr03:34667579..34667603 (25 bp)
TGGGCGCTCTTGTGTACCTCATCTA
LOC_Os03g61140
Os.17682.1.S1_at--1142--8191Chr03:34667436..34667460 (25 bp)
GGAAGGCCTAAATTCAGTCACACGC
LOC_Os03g61140
Os.17682.1.S1_at--522--10651Chr03:34667347..34667371 (25 bp)
TTCCGTTGACATTAGTTTTGACCGA
LOC_Os03g61140
Os.17682.1.S1_at--848--10571Chr03:34667313..34667337 (25 bp)
TTCTATACACCCCTTGTCGCTGATG
LOC_Os03g61140
Os.17682.1.S1_at--844--7231Chr03:34667298..34667322 (25 bp)
GTCGCTGATGGGTTTATACTGCTTT
LOC_Os03g61140
Os.17682.1.S1_at--1124--311Chr03:34667283..34667307 (25 bp)
ATACTGCTTTCCTGTACACATTCTT
LOC_Os03g61140
Target Sequence 
TGCCAGTACAGCCATCACGAACAAATCAGGAACTCAAGTGCCTGTTAAGTTTCCCATTTTTCTGATGAGCTGCCGTAGAA
GAATTGGCAAGGACCAGTCCCTCTTCTTCGAAGAATGCGAAAAGGCAGGCCTGGAAGTACAGCATCTGGGCGCTCTTGTG
TACCTCATCTACACCAAGCAGTAGCGAAAATCCAGTGGATCATCATTAGGGTTAGATTGCTCAAATGGCAACAANNNNNA
GGCATAAATTCAGTCACAAGCCAGTAAAATGGAATTTTCTCAAATGGCAANAGAGGAAGGCCTAAATTCAGTCACACGCC
AGTAAAATGGAAAGGAAACATGGATTTTTTTGGTAGAGCATGAAACTGGTATTTCGTCTTATTTTCCGTTGACATTAGTT
TTGACCGAGAATTTATCTTCTATACACCCCTTGTCGCTGATGGGTTTATACTGCTTTCCTGTACACATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis