Browse Element(s) Details


Os.4176.1.S1_at

Description gb:AB022602.1
DB_XREF= gi:5360656
GEN=OsASA1
TID=Os.4176.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4176 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsASA1 mRNA for anthranilate synthase alpha 1 subunit, complete cds.
PROD=anthranilate synthase alpha 1 subunit
FL= gb:AB022602.1 gb:AK072053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6112011/11anthranilate synthase component I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009073biological_processaromatic amino acid family biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0005950cellular_componentanthranilate synthase complex
GO:0009507cellular_componentchloroplast
GO:0004049molecular_functionanthranilate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4176.1.S1_at--667--8951Chr03:34655383..34655407 (25 bp)
TGACTTGTTGGGATGCTCTTCGAGC
LOC_Os03g61120
Os.4176.1.S1_at--131--5051Chr03:34655360..34655384 (25 bp)
GCAGCATTGCCCGTTGGAACAGTTA
LOC_Os03g61120
Os.4176.1.S1_at--190--5991Chr03:34654848..34654872 (25 bp)
GAGACATGGACATCGCACTTGCTCT
LOC_Os03g61120
Os.4176.1.S1_at--265--7011Chr03:34654781..34654805 (25 bp)
GTACTCCTACACTGACAAGAATGCT
LOC_Os03g61120
Os.4176.1.S1_at--752--7231Chr03:34654714..34654738 (25 bp)
GTCGCTGACAGCAAGCCTGACGATG
LOC_Os03g61120
Os.4176.1.S1_at--458--6431Chr03:34654642..34654666 (25 bp)
GATCTTGCCGAGTCTACATTCGTAG
LOC_Os03g61120
Os.4176.1.S1_at--424--6431Chr03:34654610..34654634 (25 bp)
GATCATCCAGCTTAGGTTTTCAGAT
LOC_Os03g61120
Os.4176.1.S1_at--950--6431Chr03:34654578..34654602 (25 bp)
GATCACCCAGTTTAGGACAGCTTTG
LOC_Os03g61120
Os.4176.1.S1_at--662--10351Chr03:34654552..34654576 (25 bp)
TTTATGTTCTGTTGCTTTCTAGTAG
LOC_Os03g61120
Os.4176.1.S1_at--723--6951Chr03:34654531..34654555 (25 bp)
GTAGAGCAGAAACCATTCCGGCCCT
LOC_Os03g61120
Os.4176.1.S1_at--1106--3611Chr03:34654508..34654532 (25 bp)
CTTGTGCTGTAGGATTTCGCTGCTT
LOC_Os03g61120
Target Sequence 
TGACTTGTTGGGATGCTCTTCGAGCAGCATTGCCCGTTGGAACAGTTAGTGGTGCACCAAAGGTGAGAGCGATGGAGCTG
ATTGACCAGATGGAAGGGAAGATGCGTGGGCCGTACAGTGGTGGCTTTGGAGGGGTTTCTTTCCGTGGAGACATGGACAT
CGCACTTGCTCTCCGTACCATCGTCTTCCCCACGGGATCTCGCTTCGACACCATGTACTCCTACACTGACAAGAATGCTC
GTCAGGAGTGGGTGGCTCACCTTCAGGCTGGAGCTGGGATCGTCGCTGACAGCAAGCCTGACGATGAGCATCAGGAGTGC
TTGAACAAGGCTGCTGGCCTTGCTCGTGCCATCGATCTTGCCGAGTCTACATTCGTAGATGAGTAGATCATCCAGCTTAG
GTTTTCAGATAAAAAAAGATCACCCAGTTTAGGACAGCTTTGTTTTATGTTCTGTTGCTTTCTAGTAGAGCAGAAACCAT
TCCGGCCCTTGTGCTGTAGGATTTCGCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis