Browse Element(s) Details


OsAffx.13565.1.S1_at

Description tigr:9631.m06022
TID=OsAffx.13565.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lipophosphoglycan biosynthetic
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6110011/11GONST2 Golgi Nucleotide sugar transporter, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13565.1.S1_at--610--7571Chr03:34648810..34648831 (22 bp)
GGGCTGCCTTGTGTCTAATGGTTAT
LOC_Os03g61100
OsAffx.13565.1.S1_at--868--4331Chr03:34648602..34648626 (25 bp)
CCATCCGGTTGGCTACATGTGGCAA
LOC_Os03g61100
OsAffx.13565.1.S1_at--1005--531Chr03:34648312..34648336 (25 bp)
ATCCGGTTCCCTCAATGAAGTTTCT
LOC_Os03g61100
OsAffx.13565.1.S1_at--297--7431Chr03:34648284..34648308 (25 bp)
GTGTTACTTAACAATGCGCTCTCCA
LOC_Os03g61100
OsAffx.13565.1.S1_at--412--6371Chr03:34647805..34647829 (25 bp)
GATCCTATGTTCTGGGCTTTTGCAA
LOC_Os03g61100
OsAffx.13565.1.S1_at--187--3711Chr03:34647766..34647790 (25 bp)
CTAGGTCTGGCAATTAGCTTCTCAT
LOC_Os03g61100
OsAffx.13565.1.S1_at--907--1551Chr03:34647751..34647775 (25 bp)
AGCTTCTCATCTGTGTGGTTTTTAC
LOC_Os03g61100
OsAffx.13565.1.S1_at--890--10351Chr03:34647733..34647757 (25 bp)
TTTTTACATCGGACTGGCCCAACAA
LOC_Os03g61100
OsAffx.13565.1.S1_at--202--2051Chr03:34647566..34647733 (25 bp)
ACTTACAGCCTTGTTGGTTCACTGA
LOC_Os03g61100
OsAffx.13565.1.S1_at--136--10211Chr03:34647531..34647555 (25 bp)
TATTTCGGTGGCTGGTATCTTGCTT
LOC_Os03g61100
OsAffx.13565.1.S1_at--492--431Chr03:34647517..34647539 (23 bp)
ATCTTGCTTTTCAACGTACCAGTCT
LOC_Os03g61100
Target Sequence 
GGGCTGCCTTGTGTCTAATGGTTATATCAGCTGTATGTGGGGGGATTACAGATCTTTCTTTCCATCCGGTTGGCTACATG
TGGCAACTTTTCAATTGCTTTCTGACAGCAGGCTACTCGCTTACACTAAGACGTGTGATGGATGTAGCCAAACAATCAAC
AAAATCCGGTTCCCTCAATGAAGTTTCTATGGTGTTACTTAACAATGCGCTCTCCATACCTTTAGCACTCATTTTGATTG
TTATCTTCGACGAATGGCAATACGTTTATGAAGTTGAAGTTACTAGAGATCCTATGTTCTGGGCTTTTGCAACAGCTAGT
GGTTTGCTAGGTCTGGCAATTAGCTTCTCATCTGTGTGGTTTTTACATCGGACTGGCCCAACAACTTACAGCCTTGTTGG
TTCACTGAACAAGATACCTATTTCGGTGGCTGGTATCTTGCTTTTCAACGTACCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis