Browse Element(s) Details


Os.7367.1.S1_at

Description gb:AK071472.1
DB_XREF= gi:32981495
TID=Os.7367.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative small nuclear ribonucleoprotein (OSJNBa0010E04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095J08, full insert sequence.
FL= gb:AK071472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6111011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0009409biological_processresponse to cold
GO:0016607cellular_componentnuclear speck
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7367.1.S1_at--1119--1391Chr03:34653445..34653469 (25 bp)
ACAAAGGTTCCCTGACAGAGCTAAA
LOC_Os03g61110
Os.7367.1.S1_at--237--4991Chr03:34653489..34653513 (25 bp)
GCAGGGAAGGGCAGTCCTCAAGATC
LOC_Os03g61110
Os.7367.1.S1_at--318--6191Chr03:34653515..34653539 (25 bp)
GAGGCATACAAAGACCGTGATTCCA
LOC_Os03g61110
Os.7367.1.S1_at--90--5831Chr03:34653527..34653551 (25 bp)
GACCGTGATTCCAGGCTTAGGCATA
LOC_Os03g61110
Os.7367.1.S1_at--655--351Chr03:34653715..34653739 (25 bp)
ATCAAGGCGGGACACTGATTCTAGT
LOC_Os03g61110
Os.7367.1.S1_at--14--10271Chr03:34653808..34653832 (25 bp)
TTTGTTGTTGCTTCAGACGTTGTTC
LOC_Os03g61110
Os.7367.1.S1_at--497--6411Chr03:34653834..34653858 (25 bp)
GATCTGTTCGATGTTTGTTCTTGTA
LOC_Os03g61110
Os.7367.1.S1_at--1109--6531Chr03:34653871..34653895 (25 bp)
GATTTTTGTTTGATCCTTGGGTCTG
LOC_Os03g61110
Os.7367.1.S1_at--870--9231Chr03:34653884..34653908 (25 bp)
TCCTTGGGTCTGATATTAGTCTAAT
LOC_Os03g61110
Os.7367.1.S1_at--502--6291Chr03:34653931..34653955 (25 bp)
GATGATTTTGAACGCACTGGCCCAT
LOC_Os03g61110
Os.7367.1.S1_at--511--8411Chr03:34653949..34653973 (25 bp)
GGCCCATAGACCATAGACGAGTTTG
LOC_Os03g61110
Target Sequence 
ACAAAGGTTCCCTGACAGAGCTAAAGAGGAGANCAAATCAACTGGCAGGGAAGGGCAGTCCTCAAGATCGGAGGCATACA
AAGACCGTGATTCCAGGCTTAGGCATAGTGATAGAGGTTCAAAAGATCATGACAGGTATAGGCATGATAGATCNCCNTGA
GAGATCAAGAGGTGATAGGCAGAGAAACAATGACAGATATGCCCAAGGAAGAGATGAAAAATCAGAAAGGTACAGATCTG
AAGTGAAACATGATGAAGGAGACCAGAAGCGATCAAGGCGGGACACTGATTCTAGTGGACATTATGAAAGGAGGGGTAAC
GAAGATTCAGAAAGGTACAGGAAATCACGGAGATAAAATTTGGATTTGTTGTTGCTTCAGACGTTGTTCTGATCTGTTCG
ATGTTTGTTCTTGTACGAGATGGATAAGATTTTTGTTTGATCCTTGGGTCTGATATTAGTCTAATAGATGCCATAGATTA
CATTTGAGATGATTTTGAACGCACTGGCCCATAGACCATAGACGAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis