Browse Element(s) Details


Os.11897.1.S1_at

Description gb:AK065702.1
DB_XREF= gi:32975720
TID=Os.11897.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0010E04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035P06, full insert sequence.
FL= gb:AK065702.1 gb:AK119789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6115011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11897.1.S1_at--406--4591Chr03:34673092..34673116 (25 bp)
GCGACTCGCGTGGAGGGCTTCTTCC
LOC_Os03g61150
Os.11897.1.S1_at--543--1371Chr03:34673043..34673067 (25 bp)
AGAGCCCCAGCAAGAGCCACGACTG
LOC_Os03g61150
Os.11897.1.S1_at--372--4071Chr03:34672855..34672879 (25 bp)
CGAGGAGCAACTGGGCGTTCCTGAA
LOC_Os03g61150
Os.11897.1.S1_at--270--4291Chr03:34672728..34672752 (25 bp)
CCTCGACCATCGCATATAGCATAAA
LOC_Os03g61150
Os.11897.1.S1_at--955--7731Chr03:34672647..34672671 (25 bp)
GGTGTGTGTTCATAGTACGTATTAC
LOC_Os03g61150
Os.11897.1.S1_at--654--6851Chr03:34672622..34672646 (25 bp)
GTTTGATAATTACCCCACGCTACAG
LOC_Os03g61150
Os.11897.1.S1_at--828--131Chr03:34672559..34672583 (25 bp)
ATTAAATTTGCGTTCTTTGGGTCAT
LOC_Os03g61150
Os.11897.1.S1_at--521--3691Chr03:34672545..34672569 (25 bp)
CTTTGGGTCATTTTGCATCAGTGTA
LOC_Os03g61150
Os.11897.1.S1_at--337--1911Chr03:34672513..34672537 (25 bp)
ACGTGCATCCGTATATGTACATATA
LOC_Os03g61150
Os.11897.1.S1_at--16--251Chr03:34672493..34672517 (25 bp)
ATATACCGCTATGTCGTCCTATGTA
LOC_Os03g61150
Os.11897.1.S1_at--772--7191Chr03:34672481..34672505 (25 bp)
GTCGTCCTATGTATGCAAAAGCTGT
LOC_Os03g61150
Target Sequence 
GCGACTCGCGTGGAGGGCTTCTTCCCCCACGACGACGCCGCCGCCGCCGAGAGCCCCAGCAAGAGCCACGACTGGTGGAC
GAGGAGCAACTGGGCGTTCCTGAACGAGCCGCCGCAGGAGGAGATCGCCGGCAAGGCGCAGAACTACGCGCCGCAGTTCC
ACGTCGCCCGGATCGCCACCGGCAACGCATGAACAACGCCACAACCCCTCGACCATCGCATATAGCATAAATTAGTAGTA
GTATTGATCAATCGATCANGCCAGTGCGAGTGACGTGGGGCTTGGCTTGGTGTGTGTTCATAGTACGTATTACGTTTGAT
AATTACCCCACGCTACAGCAGAGTAGGACTAGAGAGAGATATGATGGTACTAGTAAATTAAATTTGCGTTCTTTGGGTCA
TTTTGCATCAGTGTATGTACATACGTGCATCCGTATATGTACATATACCGCTATGTCGTCCTATGTATGCAAAAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis