Browse Element(s) Details


Os.16964.2.S1_at

Description gb:AK066364.1
DB_XREF= gi:32976382
TID=Os.16964.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative signal transduction protein (OSJNBa0010E04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066K23, full insert sequence.
FL= gb:AK066364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6120011/11BLYIDS4G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16964.2.S1_at--699--10571Chr03:34697687..34697711 (25 bp)
TTCTTTGGTTTGACAGCATATTATC
LOC_Os03g61200
Os.16964.2.S1_at--542--4951Chr03:34697702..34697726 (25 bp)
GCATATTATCAGGATTTTGGAGTTC
LOC_Os03g61200
Os.16964.2.S1_at--735--10411Chr03:34697764..34697788 (25 bp)
TTATTAGCTGACTTGGGTGAACTTT
LOC_Os03g61200
Os.16964.2.S1_at--822--7091Chr03:34697780..34697804 (25 bp)
GTGAACTTTATGCAAACCCCCAGTA
LOC_Os03g61200
Os.16964.2.S1_at--75--4211Chr03:34697797..34697821 (25 bp)
CCCCAGTAGCATTTTGACATATTCT
LOC_Os03g61200
Os.16964.2.S1_at--18--1431Chr03:34697830..34697854 (25 bp)
AGAAAGCCACAAAGCTCCCAATTCT
LOC_Os03g61200
Os.16964.2.S1_at--134--2691Chr03:34697841..34697865 (25 bp)
AAGCTCCCAATTCTGCAGTGTACAT
LOC_Os03g61200
Os.16964.2.S1_at--609--9471Chr03:34697852..34697876 (25 bp)
TCTGCAGTGTACATTCATAAACGCT
LOC_Os03g61200
Os.16964.2.S1_at--203--3571Chr03:34697867..34697891 (25 bp)
CATAAACGCTGTATTGTCTGAACAA
LOC_Os03g61200
Os.16964.2.S1_at--102--8731Chr03:34697881..34697905 (25 bp)
TGTCTGAACAAATTACAGCGTCATG
LOC_Os03g61200
Os.16964.2.S1_at--436--3391Chr03:34697896..34697920 (25 bp)
CAGCGTCATGAAACAGTGATTCTTT
LOC_Os03g61200
Target Sequence 
TTCTTTGGTTTGACAGCATATTATCAGGATTTTGGAGTTCTGGANTTCTGATGTTTTAGGCAGAGAGCAAATGTGAGTTA
TTAGCTGACTTGGGTGAACTTTATGCAAACCCCCAGTAGCATTTTGACATATTCTTTGTACAAAGAAAGCCACAAAGCTC
CCAATTCTGCAGTGTACATTCATAAACGCTGTATTGTCTGAACAAATTACAGCGTCATGAAACAGTGATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16964.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis