Browse Element(s) Details


OsAffx.25789.1.S1_at

Description tigr:9631.m06040
TID=OsAffx.25789.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative OsNAC protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6124911/11No apical meristem protein
LOC_Os03g6131911/11No apical meristem protein
LOC_Os03g624701/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61280Os.7260.1.S1_x_at11/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280Os.38099.2.S1_x_at4/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290OsAffx.22646.1.S1_at11/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61290OsAffx.4492.1.S1_x_at1/113+34741856..34746534cation/hydrogen exchanger, putative

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25789.1.S1_at--393--7854Chr03:34723189..34723213 (25 bp)
GGTACCTCCAGAAGTTCTCCTATGG
LOC_Os03g61249
OsAffx.25789.1.S1_at--1109--10093Chr03:34723209..34723233 (25 bp)
TATGGCGTCTACGAGTCGTCGTCGT
LOC_Os03g61249
OsAffx.25789.1.S1_at--571--9452Chr03:34723239..34723263 (25 bp)
TCGGCGCGCACGTTCACGAGGCTAG
LOC_Os03g61249
OsAffx.25789.1.S1_at--23--4092Chr03:34723295..34723319 (25 bp)
CGACGCCATCGACGGAGCAGACAAG
LOC_Os03g61249
OsAffx.25789.1.S1_at--872--4332Chr03:34723404..34723428 (25 bp)
CCATGCTCCGGCTCGAAGAGGAAGG
LOC_Os03g61249
OsAffx.25789.1.S1_at--779--6352Chr03:34723508..34723532 (25 bp)
GATCCTGCCGGAGTTGGACCTGGAT
LOC_Os03g61249
OsAffx.25789.1.S1_at--829--6112Chr03:34723567..34723591 (25 bp)
GAGTGGAATTCGACACGGCCACGAC
LOC_Os03g61249
OsAffx.25789.1.S1_at--146--1952Chr03:34723581..34723605 (25 bp)
ACGGCCACGACGGAGCAGTACATGA
LOC_Os03g61249
OsAffx.25789.1.S1_at--22--6312Chr03:34723613..34723637 (25 bp)
GATGAACGACGAGCCATTGCCGTGG
LOC_Os03g61249
OsAffx.25789.1.S1_at--628--5772Chr03:34723685..34723709 (25 bp)
GACGAACGGACCTTGCATGGGCGAA
LOC_Os03g61249
OsAffx.25789.1.S1_at--226--1632Chr03:34723723..34723747 (25 bp)
AGCGGCTGGCTTCCGGAGAAACCCT
LOC_Os03g61249
Target Sequence 
GGTACCTCCAGAAGTTCTCCTATGGCGTCTACGAGTCGTCGTCGTCGGGGTCGGCGCGCACGTTCACGAGGCTAGGGTGG
TGCATGACGGAGTACGGCCTCGACGACGACGCCATCGACGGAGCAGACAAGCAGGTGCTCTGCAAGGTCTACCGCTCGCC
GCGCGCGGTCTGCGCGGAGGCGCGCACGGCGGCGGCGGCGAAGTCGGCCGATTCGCCATGCTCCGGCTCGAAGAGGAAGG
CGGACGACGGCGCGGATCACCCGGAGGCGCCGCCCAGCGCGCGGCCGCGGCAAGAGGAGGCCGGGAGCGAGCAGCCGGCG
ATCCTGCCGGAGTTGGACCTGGATGCGTTGCTGTCGGCGCCGATGGACGACAGTTTGGGAGTGGAATTCGACACGGCCAC
GACGGAGCAGTACATGAGGTATCTGATGAACGACGAGCCATTGCCGTGGGCTCCGACGATGGAGGTTGCCGGCGGCGGAG
ACGAATTCATCGAGACGACGAACGGACCTTGCATGGGCGAAGAGGAGATCATCCAGCGGCTGGCTTCCGGAGAAACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis