Browse Element(s) Details


OsAffx.13566.1.S1_at

Description tigr:9631.m06038
TID=OsAffx.13566.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6123010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61280Os.7260.1.S1_x_at11/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280Os.38099.2.S1_x_at4/113+34736491..34739744beta-mannan endohydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13566.1.S1_at--258--311Chr03:34715833..34715857 (25 bp)
ATACGAAGGTTCTTGCGTGCCACAG
LOC_Os03g61230
OsAffx.13566.1.S1_at--151--9211Chr03:34715816..34715840 (25 bp)
TGCCACAGGTGGATACAAGATGAAT
LOC_Os03g61230
OsAffx.13566.1.S1_at--674--5211Chr03:34715795..34715819 (25 bp)
GAATTCTTGAGGAAAGCTACTCACA
LOC_Os03g61230
OsAffx.13566.1.S1_at--906--1551Chr03:34715781..34715805 (25 bp)
AGCTACTCACAAGTGGGCGTTTCTC
LOC_Os03g61230
OsAffx.13566.1.S1_at--824--8651Chr03:34715768..34715792 (25 bp)
TGGGCGTTTCTCTCAGACATGTCAC
LOC_Os03g61230
OsAffx.13566.1.S1_at--114--5671Chr03:34715753..34715777 (25 bp)
GACATGTCACCTCGGAAGTTCGTTA
LOC_Os03g61230
OsAffx.13566.1.S1_at--663--2811Chr03:34715738..34715762 (25 bp)
AAGTTCGTTATATTTCTGGCTGGTC
LOC_Os03g61230
OsAffx.13566.1.S1_at--974--191Chr03:34715727..34715751 (25 bp)
ATTTCTGGCTGGTCGTTGCAGCAAC
LOC_Os03g61230
OsAffx.13566.1.S1_at--1098--2431NONE
AAAATGAAACTGCAGGGTTGGCATG
NONE
OsAffx.13566.1.S1_at--985--8491Chr03:34714946..34714970 (25 bp)
TGGCATGCACAGATGATGGCGTCTT
LOC_Os03g61230
OsAffx.13566.1.S1_at--990--8871Chr03:34714933..34714957 (25 bp)
TGATGGCGTCTTGTCATATTTGCAG
LOC_Os03g61230
Target Sequence 
ATACGAAGGTTCTTGCGTGCCACAGGTGGATACAAGATGAATTCTTGAGGAAAGCTACTCACAAGTGGGCGTTTCTCTCA
GACATGTCACCTCGGAAGTTCGTTATATTTCTGGCTGGTCGTTGCAGCAACCAGCTGAAAATGAAACTGCAGGGTTGGCA
TGCACAGATGATGGCGTCTTGTCATATTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis