Browse Element(s) Details


Os.11687.1.S1_a_at

Description gb:AK062046.1
DB_XREF= gi:32972064
TID=Os.11687.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (OSJNBa0010E04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A10, full insert sequence.
FL= gb:AK062046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6122011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0017151molecular_functionDEAD/H-box RNA helicase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11687.1.S1_a_at--197--4831Chr03:34710268..34710292 (25 bp)
GCTCATCATCTTTTGGGTCTAGGGA
LOC_Os03g61220
Os.11687.1.S1_a_at--218--5911Chr03:34710719..34710743 (25 bp)
GAGCTTCAGTGGTGCTTGCTTCAAC
LOC_Os03g61220
Os.11687.1.S1_a_at--986--1231Chr03:34710823..34710847 (25 bp)
AGTTGCTCCTTCTGGGCTTGATCAT
LOC_Os03g61220
Os.11687.1.S1_a_at--1149--2671Chr03:34710856..34710880 (25 bp)
AAGCGGCTGGACTATTCAACACATG
LOC_Os03g61220
Os.11687.1.S1_a_at--246--611Chr03:34710924..34710948 (25 bp)
ATGCCCAACACTATTGCCTGACGAA
LOC_Os03g61220
Os.11687.1.S1_a_at--555--8671Chr03:34710974..34710998 (25 bp)
TGTGTCGTCATTCCGTCGTGAAGAT
LOC_Os03g61220
Os.11687.1.S1_a_at--477--5351Chr03:34710993..34711017 (25 bp)
GAAGATTTTGGCACGCTGACCACCA
LOC_Os03g61220
Os.11687.1.S1_a_at--1150--5991Chr03:34711021..34711045 (25 bp)
GAGAGCCTTCTGTTCATTTATATGT
LOC_Os03g61220
Os.11687.1.S1_a_at--898--6771Chr03:34711077..34711101 (25 bp)
GTTACCACCTGGGAGTTCTCAATAG
LOC_Os03g61220
Os.11687.1.S1_a_at--572--2291Chr03:34711114..34711138 (25 bp)
AAATGAACCGTGTGTACAGCTCGTT
LOC_Os03g61220
Os.11687.1.S1_a_at--31--9871Chr03:34711141..34711165 (25 bp)
TACACGACTGGACTGGCTGATGCCA
LOC_Os03g61220
Target Sequence 
GCTCATCATCTTTTGGGTCTAGGGACAGCAGCAGGAGCTTCAGTGGTGCTTGCTTCAACTGTGGCGAAAGCGGGCACCGA
GCATCAGACTGCCCAAACAAGTAGATGGTAGAAACAACACTCTTCCCTGCCGCTCGGGAGTTGCTCCTTCTGGGCTTGAT
CATGTTCCAACAAGCGGCTGGACTATTCAACACATGCCAAGGAACACCAAAGCCCAGTCCCCCTTCATCTGATCCATACA
TGCCCAACACTATTGCCTGACGAAGATTTTGCACTGGTTAGTACAGCTCTGTGTCGTCATTCCGTCGTGAAGATTTTGGC
ACGCTGACCACCAAAGGAGAGCCTTCTGTTCATTTATATGTAATACGGGTTTTACAGGGACGTTAAATTTTTGTTACCAC
CTGGGAGTTCTCAATAGGATGTTAAGATTAAATGAACCGTGTGTACAGCTCGTTCCTACACGACTGGACTGGCTGATGCC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11687.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis