Browse Element(s) Details


Os.9706.1.S1_at

Description gb:AK066888.1
DB_XREF= gi:32976906
TID=Os.9706.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative organic solute transporter (OSJNBa0010E04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088J18, full insert sequence.
FL= gb:AK104819.1 gb:AK066888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6121011/11MAP kinase-activating protein C22orf5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein
LOC_Os03g61249OsAffx.25789.1.S1_at11/113+34722828..34723778No apical meristem protein
LOC_Os03g61260Os.10156.1.S1_a_at11/113+34724407..3472628350S ribosomal protein L18, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9706.1.S1_at--947--1071Chr03:34698903..34698927 (25 bp)
AGGGAAGCCTTCTGCATGCTCTGAA
LOC_Os03g61210
Os.9706.1.S1_at--71--6751Chr03:34698746..34698877 (25 bp)
GTTCATCAGTTTGCACCTACCTATA
LOC_Os03g61210
Os.9706.1.S1_at--228--6911Chr03:34698672..34698696 (25 bp)
GTATCCTTCAGTGAGTACCGTGCCA
LOC_Os03g61210
Os.9706.1.S1_at--1071--1471Chr03:34698633..34698657 (25 bp)
AGAATTGTCTGGCATCTCTGTGATG
LOC_Os03g61210
Os.9706.1.S1_at--239--4471Chr03:34698609..34698633 (25 bp)
GCCTGCGAACAGTGCGGTGACATCA
LOC_Os03g61210
Os.9706.1.S1_at--603--9711Chr03:34698587..34698611 (25 bp)
TCAAGCGTATCGTCAAACCAGGCAG
LOC_Os03g61210
Os.9706.1.S1_at--482--6931Chr03:34698515..34698539 (25 bp)
GTAGGGCTTTACGACCTGACAGACT
LOC_Os03g61210
Os.9706.1.S1_at--518--8571Chr03:34698481..34698505 (25 bp)
TGGATTTGTCTAACTACCCAGCCAA
LOC_Os03g61210
Os.9706.1.S1_at--557--3211Chr03:34698459..34698483 (25 bp)
CAAGGTTCCTGCAATCTCTGATGTA
LOC_Os03g61210
Os.9706.1.S1_at--784--7631Chr03:34698324..34698348 (25 bp)
GGGAGCTATTCATGTCAGCACCTGT
LOC_Os03g61210
Os.9706.1.S1_at--732--1991Chr03:34698284..34698308 (25 bp)
ACTCGCTCTTTTCGCTAACTGTAAA
LOC_Os03g61210
Target Sequence 
AGGGAAGCCTTCTGCATGCTCTGAAGTTCAATGATTTCTACCATGATACTGTTCATCAGTTTGCACCTACCTATAACGAA
TATGTGCTGTACAATCACAATGAGGGAGACAGCACTCAAAGGAAGTATCCTTCAGTGAGTACCGTGCCATCCGGGCGGGA
TGTAGAATTGTCTGGCATCTCTGTGATGCCTGCGAACAGTGCGGTGACATCAAGCGTATCGTCAAACCAGGCAGATCAGG
AAGAAACAATGAGCACCCCAATCAAGGACAGAGTTGATAATGTAGGGCTTTACGACCTGACAGACTTGCTTGATGTGGAT
TTGTCTAACTACCCAGCCAAGGTTCCTGCAATCTCTGATGTAAGAAAACAATGACATTGTGATGGCCTTTGGCGGGTGGC
AATCGGGGAAATCGTGTTTTCCGTTTGATCATAGATAACGCTGTAAAAATGTGTGTATTACTTCCCATTGAAGGGAGCTA
TTCATGTCAGCACCTGTCTTACGGCCTCTCTGACTCGCTCTTTTCGCTAACTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis