Browse Element(s) Details


OsAffx.22645.1.S1_at

Description gb:NM_185123.1
DB_XREF= gi:34897331
GEN=OSJNBa0010E04.6
TID=OsAffx.22645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0010E04.6), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6119011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed
LOC_Os03g61230OsAffx.13566.1.S1_at10/113+34714899..34715909hypothetical protein
LOC_Os03g61240NANA3+34717810..34718187hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22645.1.S1_at--688--6431Chr03:34690417..34690441 (25 bp)
GATCATCAATCCTTGTGCCATTTGG
LOC_Os03g61190
OsAffx.22645.1.S1_at--199--1571Chr03:34690250..34690273 (24 bp)
AGCTATTTCTGTTGTGCAGCCTGTG
LOC_Os03g61190
OsAffx.22645.1.S1_at--725--9551Chr03:34690204..34690228 (25 bp)
TCTTATGTTGTGGATTCTCAGGCTC
LOC_Os03g61190
OsAffx.22645.1.S1_at--690--7931Chr03:34690193..34690217 (25 bp)
GGATTCTCAGGCTCAATTACTGCTG
LOC_Os03g61190
OsAffx.22645.1.S1_at--558--10471Chr03:34690177..34690201 (25 bp)
TTACTGCTGATAGAATTGGCCATTT
LOC_Os03g61190
OsAffx.22645.1.S1_at--546--3571Chr03:34690157..34690181 (25 bp)
CATTTCTTCTCCTAACGGCCAGGGT
LOC_Os03g61190
OsAffx.22645.1.S1_at--50--2271Chr03:34690059..34690083 (25 bp)
AAATCATATCTGCTTTCCGTGACTC
LOC_Os03g61190
OsAffx.22645.1.S1_at--1090--6751Chr03:34690012..34690036 (25 bp)
GTTCAAGCAACTTATCAGCGAGTCA
LOC_Os03g61190
OsAffx.22645.1.S1_at--487--411Chr03:34689956..34689980 (25 bp)
ATCAGTGACTGACTTTGTCCAACAG
LOC_Os03g61190
OsAffx.22645.1.S1_at--719--8971Chr03:34689905..34689929 (25 bp)
TGAAAATTGTGCTTACCCTGGTCTG
LOC_Os03g61190
OsAffx.22645.1.S1_at--784--3151Chr03:34689866..34689890 (25 bp)
AATTCCTTCTGGAGCCTGGCAAGTT
LOC_Os03g61190
Target Sequence 
GATCATCAATCCTTGTGCCATTTGGATGATCAAGCTATTTCTGTTGTGCAGCCTGTGTGGATACAAGAAGTGTTGAATTC
TTATGTTGTGGATTCTCAGGCTCAATTACTGCTGATAGAATTGGCCATTTCTTCTCCTAACGGCCAGGGTTTTACTTTGT
CTCAAGGATTAATTAAGAAGAATGGCAGGGTTTGGATAGGAGCTAATTCAGCTATTCAAACCAAAATCATATCTGCTTTC
CGTGACTCTGCTGTGAGGGGTCACTCTGGAGTTCAAGCAACTTATCAGCGAGTCAAGAAGTTGTTTGTTTGGGTAGGATT
AAAGAAATCAGTGACTGACTTTGTCCAACAGTGTGACATCTGTCAGAGGGCTAAACATGAAAATTGTGCTTACCCTGGTC
TGTTACAGCCCTTACCAATTCCTTCTGGAGCCTGGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis