Browse Element(s) Details


Os.28200.1.S1_x_at

Description gb:AK099709.1
DB_XREF= gi:32984918
TID=Os.28200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycoprotein (OSJNBa0010E04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075N13, full insert sequence.
FL= gb:AK099709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28200.1.S1_x_at--1089--1611Chr03:34678475..34678499 (25 bp)
AGCTGGGCATTCCTGAACGAGACGC
LOC_Os03g61160
Os.28200.1.S1_x_at--209--1311Chr03:34678435..34678459 (25 bp)
AGATGTTCGGCAAGTCGCAGACGTA
LOC_Os03g61160
Os.28200.1.S1_x_at--736--2591Chr03:34678370..34678394 (25 bp)
AACGCCTAGGCCTCAGCTAGTTATA
LOC_Os03g61160
Os.28200.1.S1_x_at--782--6771Chr03:34678351..34678375 (25 bp)
GTTATAGCTAGCCACATGTCAGGGA
LOC_Os03g61160
Os.28200.1.S1_x_at--668--1871Chr03:34678292..34678316 (25 bp)
ACGTTAGTACTTAGGCTGGTTAGCT
LOC_Os03g61160
Os.28200.1.S1_x_at--781--10011Chr03:34678264..34678288 (25 bp)
TAGCTTAGCTTTGCAGCTCTGCATC
LOC_Os03g61160
Os.28200.1.S1_x_at--311--3551Chr03:34678243..34678267 (25 bp)
CATCGTCCTGATCCTCTAAGAGAGT
LOC_Os03g61160
Os.28200.1.S1_x_at--602--8371Chr03:34678123..34678147 (25 bp)
GGCGTTCGAGAGCTTTTAATCCTTC
LOC_Os03g61160
Os.28200.1.S1_x_at--366--9751Chr03:34678107..34678131 (25 bp)
TAATCCTTCAGCTCTCCGTGTAAAT
LOC_Os03g61160
Os.28200.1.S1_x_at--254--751Chr03:34678069..34678093 (25 bp)
ATGTATATACTCTCTCTAGTCTCTC
LOC_Os03g61160
Os.28200.1.S1_x_at--1104--7451Chr03:34677998..34678022 (25 bp)
GTGTGAGTAGTTCTGTGACTTCTTA
LOC_Os03g61160
Target Sequence 
AGCTGGGCATTCCTGAACGAGACGCCGTCGCCGGAGCAGCAGATGTTCGGCAAGTCGCAGACGTACGCCTGCGTTCAGTT
CCACGTCTCCCGGGTCGTCACCGGCAACGCCTAGGCCTCAGCTAGTTATAGCTAGCCACATGTCAGGGAATGCATATGCA
TGTACGTATGTACGTACGTATATACGTTAGTACTTAGGCTGGTTAGCTAGCTAGCTTAGCTTTGCAGCTCTGCATCGTCC
TGATCCTCTAAGAGAGTAGTGTGTTCTGTAGTAGTGGTTAAGTACGCATGCAATTTGTATGTGTAGAATATTACTATACA
AAGAGCAGTAGAGAAGTGTATAGGATCGGGCCGGCGTTCGAGAGCTTTTAATCCTTCAGCTCTCCGTGTAAATACAGATA
CTGCTCATGTATATACTCTCTCTAGTCTCTCCTATATAGATAGTTAATTGTGTTAAGACTGTACTTTGTGTGTGTGTGTG
TGAGTAGTTCTGTGACTTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28200.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis