Browse Element(s) Details


OsAffx.22644.1.S1_at

Description gb:NM_185125.1
DB_XREF= gi:34897335
GEN=OSJNBa0010E04.26
TID=OsAffx.22644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0010E04.26), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6117011/11retrotransposon protein, putative, unclassified
LOC_Os03g620801/11mRNA decapping enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified
LOC_Os03g61200Os.16964.2.S1_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61200Os.16964.1.S1_x_at11/113+34694945..34697926BLYIDS4G, putative, expressed
LOC_Os03g61210Os.9706.1.S1_at11/113+34698224..34701916MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os03g61220Os.11687.1.S1_a_at11/113+34705184..34711251DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22644.1.S1_at--167--9091Chr03:34683020..34683044 (25 bp)
TGCTCAGATCGTGCTTTTCAAGTTG
LOC_Os03g61170
OsAffx.22644.1.S1_at--524--10811Chr03:34682950..34682974 (25 bp)
TTGTGTCCAGACCATTTCCTAAACT
LOC_Os03g61170
OsAffx.22644.1.S1_at--403--4971Chr03:34682891..34682915 (25 bp)
GCATCTGTTGGCTCGATGACTTATC
LOC_Os03g61170
OsAffx.22644.1.S1_at--659--10691Chr03:34682858..34682882 (25 bp)
TTGCCGGCTGGTAGTTTAATTCATC
LOC_Os03g61170
OsAffx.22644.1.S1_at--18--9751Chr03:34682842..34682866 (25 bp)
TAATTCATCCGGTTTTCCATGTCTC
LOC_Os03g61170
OsAffx.22644.1.S1_at--8--8811Chr03:34682802..34682826 (25 bp)
TGTTCCCAAGTATTCTCCAGTGTTT
LOC_Os03g61170
OsAffx.22644.1.S1_at--715--1111Chr03:34682784..34682808 (25 bp)
AGTGTTTTCTCAATTGTCGTCTGCT
LOC_Os03g61170
OsAffx.22644.1.S1_at--666--3591Chr03:34682748..34682772 (25 bp)
CATTGCAGAGTTGGTGCCTACGGCA
LOC_Os03g61170
OsAffx.22644.1.S1_at--854--5191Chr03:34682726..34682750 (25 bp)
GCAATTTTGGATCGCCACATGGTGA
LOC_Os03g61170
OsAffx.22644.1.S1_at--368--5192Chr03:34682695..34682719 (25 bp)
GCAATGCTGCCGTTTTTCAAGTTTT
LOC_Os03g61170
OsAffx.22644.1.S1_at--454--8011Chr03:34682631..34682655 (25 bp)
GGAGGACTTCGATGTGGTGCACACC
LOC_Os03g61170
Target Sequence 
TGCTCAGATCGTGCTTTTCAAGTTGGGAAGTCAGTACTTCTTAAGTTACAACCGTATGCATATAAGTCTGTTGTGTCCAG
ACCATTTCCTAAACTGGCGTTTAAGTACTTTGGTCCTTTTGAGATTGAAGCATCTGTTGGCTCGATGACTTATCGTTTGA
AGTTGCCGGCTGGTAGTTTAATTCATCCGGTTTTCCATGTCTCTCAGTTGAAGAAGTATGTTCCCAAGTATTCTCCAGTG
TTTTCTCAATTGTCGTCTGCTGCTCAGTTGGACATTGCAGAGTTGGTGCCTACGGCAATTTTGGATCGCCACATGGTGAA
AAAGGGCAATGCTGCCGTTTTTCAAGTTTTGGTTCAGTGGGGTACTTTGCCTGCTGCTTTGGCGACCTGGGAGGACTTCG
ATGTGGTGCACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis