Browse Element(s) Details

OsAffx.22646.1.S1_at

Description

tigr:9631.m06046
TID=OsAffx.22646.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ion antiporter
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g61290	11/11	cation/hydrogen exchanger, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g61240	NA	NA	3	+	34717810..34718187	hypothetical protein
LOC_Os03g61249	OsAffx.25789.1.S1_at	11/11	3	+	34722828..34723778	No apical meristem protein
LOC_Os03g61260	Os.10156.1.S1_a_at	11/11	3	+	34724407..34726283	50S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270	Os.38099.2.S1_x_at	11/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.38099.1.S1_at	10/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.7260.1.S1_x_at	2/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61280	Os.7260.1.S1_x_at	11/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280	Os.38099.2.S1_x_at	4/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290	OsAffx.22646.1.S1_at	11/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61290	OsAffx.4492.1.S1_x_at	1/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61310	Os.19976.1.S1_at	10/11	3	+	34749011..34752174	D-mannose binding lectin family protein, expressed
LOC_Os03g61319	OsAffx.25789.1.S1_at	11/11	3	+	34753071..34754021	No apical meristem protein
LOC_Os03g61330	Os.30021.1.S1_at	10/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330	Os.30021.2.S1_at	9/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340	Os.25535.1.S1_at	11/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.3.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.2.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.1.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.3.S1_x_at	6/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370	OsAffx.31869.1.S1_at	10/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.5.S1_x_at	4/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_at	2/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.2.S1_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.3.S1_s_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_x_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0006812	biological_process	cation transport
GO:0005451	molecular_function	monovalent cation:proton antiporter activity
GO:0015385	molecular_function	sodium:hydrogen antiporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22646.1.S1_at--14--935	1	Chr03:34746077..34746101 (25 bp)	TCGCGTACGCCTCACGCATGGGCGA	LOC_Os03g61290
OsAffx.22646.1.S1_at--819--243	1	Chr03:34746179..34746203 (25 bp)	AAAAGCACATCTCCAACGTGCGCAA	LOC_Os03g61290
OsAffx.22646.1.S1_at--844--323	1	Chr03:34746192..34746216 (25 bp)	CAACGTGCGCAAGGCCGGAAACGAC	LOC_Os03g61290
OsAffx.22646.1.S1_at--509--185	1	Chr03:34746212..34746236 (25 bp)	ACGACGGAGCGTTCAAGTACGACGA	LOC_Os03g61290
OsAffx.22646.1.S1_at--711--283	1	Chr03:34746226..34746250 (25 bp)	AAGTACGACGAGGTGTCGGCCCATG	LOC_Os03g61290
OsAffx.22646.1.S1_at--691--447	1	Chr03:34746251..34746275 (25 bp)	GCCGGCAAGAAGTGGCGTTCGCCAT	LOC_Os03g61290
OsAffx.22646.1.S1_at--426--669	1	Chr03:34746267..34746291 (25 bp)	GTTCGCCATCAAGACACTGGGTAGA	LOC_Os03g61290
OsAffx.22646.1.S1_at--1050--851	1	Chr03:34746344..34746368 (25 bp)	TGGACAAGACGGACTGCCCGGAGCT	LOC_Os03g61290
OsAffx.22646.1.S1_at--196--401	1	Chr03:34746420..34746444 (25 bp)	CGTGCTCGTGGTGCAGAAGTACGAC	LOC_Os03g61290
OsAffx.22646.1.S1_at--915--533	1	Chr03:34746435..34746459 (25 bp)	GAAGTACGACTCGAGAGGTGACACT	LOC_Os03g61290
OsAffx.22646.1.S1_at--261--737	1	Chr03:34746452..34746476 (25 bp)	GTGACACTGGCACATCGTCGTCGAG	LOC_Os03g61290

Target Sequence

TCGCGTACGCCTCACGCATGGGCGAGCACCCTGGCATCGCGCTCACCGTGGCCCGTTTCACGGCCGCCGCCGACGACGCC
GCCGAAGACGACGACGCCATACAAAAGCACATCTCCAACGTGCGCAAGGCCGGAAACGACGGAGCGTTCAAGTACGACGA
GGTGTCGGCCCATGGCCGGCAAGAAGTGGCGTTCGCCATCAAGACACTGGGTAGAGGCAAGAACCTGGTGGTGGCCGGGC
GGTCGGCGGCGGTGGCGACGCCGCTGGTGGACAAGACGGACTGCCCGGAGCTCGGCCACGTCGGGAGCTACCTGGCGACG
CCGGAGTTCTCGACGACGTCCTCCGTGCTCGTGGTGCAGAAGTACGACTCGAGAGGTGACACTGGCACATCGTCGTCGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis