Browse Element(s) Details


Os.30021.2.S1_at

Description gb:AK109501.1
DB_XREF= gi:32994710
TID=Os.30021.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydroxylase (OSJNBa0010E04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H12, full insert sequence.
FL= gb:AK121596.1 gb:AK109501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g613309/11Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61270Os.38099.2.S1_x_at11/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.38099.1.S1_at10/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61270Os.7260.1.S1_x_at2/113+34730959..34732762endo-beta-mannanase, putative, expressed
LOC_Os03g61280Os.7260.1.S1_x_at11/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280Os.38099.2.S1_x_at4/113+34736491..34739744beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290OsAffx.22646.1.S1_at11/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61290OsAffx.4492.1.S1_x_at1/113+34741856..34746534cation/hydrogen exchanger, putative
LOC_Os03g61310Os.19976.1.S1_at10/113+34749011..34752174D-mannose binding lectin family protein, expressed
LOC_Os03g61319OsAffx.25789.1.S1_at11/113+34753071..34754021No apical meristem protein
LOC_Os03g61330Os.30021.1.S1_at10/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330Os.30021.2.S1_at9/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340Os.25535.1.S1_at11/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.3.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.2.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.1.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.1.S1_x_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.1.S1_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.2.S1_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.2.S1_x_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.3.S1_x_at6/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370OsAffx.31869.1.S1_at10/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.5.S1_x_at4/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.4.S1_at2/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.2.S1_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.3.S1_s_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.4.S1_x_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61380OsAffx.22711.4.S1_at11/113+34775361..34776347retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_x_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.1.S1_x_at2/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.2.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.8420.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.2.S1_at11/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.4.S1_x_at5/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.3.S1_x_at3/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.22692.1.A1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.20729.1.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.5.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30021.2.S1_at--108--671Chr03:34756678..34756702 (25 bp)
ATGCAATCTGTTGTGTGGACATATC
LOC_Os03g61330
Os.30021.2.S1_at--649--10732Chr03:17522544..17522567 (24 bp)
TTGCACAATATTCTTGGCTTGCCCG
NONE
Os.30021.2.S1_at--374--8291Chr03:34756514..34756538 (25 bp)
GGCTTGCCCGTACTGAAACTAATGT
LOC_Os03g61330
Os.30021.2.S1_at--973--7011Chr03:34756491..34756515 (25 bp)
GTACATTGTAAACATAGGCTTCCCA
LOC_Os03g61330
Os.30021.2.S1_at--1053--271Chr03:34756478..34756502 (25 bp)
ATAGGCTTCCCATATGACATAGTGC
LOC_Os03g61330
Os.30021.2.S1_at--841--6511Chr03:34756443..34756466 (24 bp)
GATATTCTTTTAGCATATGCCTGTG
LOC_Os03g61330
Os.30021.2.S1_at--970--10131NONE
TATGCCTGTGTAATATATGCTTATG
NONE
Os.30021.2.S1_at--864--10192Chr03:17522658..17522682 (25 bp)
TATATGCTTATGGATCACTTGTGAT
NONE
Os.30021.2.S1_at--685--6451Chr03:34756402..34756426 (25 bp)
GATCACTTGTGATGCTTTTCATGTA
LOC_Os03g61330
Os.30021.2.S1_at--611--4891Chr03:34756389..34756413 (25 bp)
GCTTTTCATGTAGAGCTTCGAGAGC
LOC_Os03g61330
Os.30021.2.S1_at--179--3951NONE
CGGATCTGTTTATAGTTTTGTGTGA
NONE
Target Sequence 
ATGCAATCTGTTGTGTGGACATATCAGTATATTGTTATGCTCNNCTTGATTTGCGCAATAAAACAAGATATTAAGGTTGC
ATGCANNTATTTATTGGCGCAACTAAAAANAATATTTTGGTCCATTAATTTCATGAAACNGGAGTGTACTTGCACAATAT
TCTTGGCTTGCCCGTACTGAAACTAATGTACATTGTAAACATAGGCTTCCCATATGACATAGTGCATGAAAANGTAGATA
TTCTTTTAGCATATGCCTGTGTAATATATGCTTATGGATCACTTGTGATGCTTTTCATGTAGAGCTTCGAGAGCATTTGT
ATCAAGAAAATCCTGGATCTGTTCTTGGGAAATCCAGACCGTACTTTACCCCCACATTGTAATCCCGGATCTGTTTATAG
TTTTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30021.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis