Browse Element(s) Details


OsAffx.20380.1.S1_at

Description gb:NM_191186.1
DB_XREF= gi:34909455
GEN=OSJNBa0014K08.24
TID=OsAffx.20380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0014K08.24 (OSJNBa0014K08.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5425011/11retrotransposon protein, putative, unclassified
LOC_Os02g194001/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g204601/11retrotransposon protein, putative, unclassified
LOC_Os05g297801/11retrotransposon protein, putative, unclassified
LOC_Os12g395801/11retrotransposon protein, putative, unclassified
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os09g010201/11transposon protein, putative, unclassified
LOC_Os03g613901/11retrotransposon protein, putative, unclassified
LOC_Os09g186101/11retrotransposon protein, putative, unclassified
LOC_Os04g086701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed
LOC_Os01g54250OsAffx.20380.1.S1_x_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.20380.1.S1_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22711.4.A1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22927.1.S1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54260OsAffx.21171.3.S1_x_at1/111+31544522..31546033retrotransposon protein, putative, unclassified
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54280OsAffx.11599.1.S1_at11/111+31556935..31557291hypothetical protein
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20380.1.S1_at--374--893Chr09:63835..63857 (23 bp)
AGGCCGCAGCCAAGCGTGACCGGGT
LOC_Os09g01020
OsAffx.20380.1.S1_at--505--2711Chr01:31543032..31543056 (25 bp)
AAGCTTCAGCGGACCGCCTCGCAGA
LOC_Os01g54250
OsAffx.20380.1.S1_at--710--1791Chr01:31543044..31543068 (25 bp)
ACCGCCTCGCAGAGGAGCTACGGCT
LOC_Os01g54250
OsAffx.20380.1.S1_at--748--3991Chr01:31543112..31543136 (25 bp)
CGTGAAGCCGATGTGAACCGCGATG
LOC_Os01g54250
OsAffx.20380.1.S1_at--342--2671Chr01:31543116..31543140 (25 bp)
AAGCCGATGTGAACCGCGATGAGGT
LOC_Os01g54250
OsAffx.20380.1.S1_at--792--4671Chr01:31543274..31543298 (25 bp)
GCGGAGTTGGTGAGCCAGCCTACCA
LOC_Os01g54250
OsAffx.20380.1.S1_at--104--8931Chr01:31543284..31543308 (25 bp)
TGAGCCAGCCTACCACGGCTCAGAG
LOC_Os01g54250
OsAffx.20380.1.S1_at--1154--4155Chr05:1560030..1560053 (24 bp)
CGCCGACCTAGAGCGCTTGGTGCAA
LOC_Os05g03650
OsAffx.20380.1.S1_at--522--9431Chr01:31543383..31543407 (25 bp)
TCGGACCTGGGCAGCTCTCCGATGC
LOC_Os01g54250
OsAffx.20380.1.S1_at--984--5053Chr12:24390366..24390388 (23 bp)
GCAGCTCTCCGATGCCGTCGATCAG
LOC_Os12g39580
OsAffx.20380.1.S1_at--249--7573Chr05:17152225..17152286 (25 bp)
GGGCGCCGAGTACACAGCCAGCACT
LOC_Os05g29780
Target Sequence 
AGGCCGCAGCCAAGCGTGACCGGGTCACCCTCGTCGCGAAAGCTTCAGCGGACCGCCTCGCAGAGGAGCTACGGCTTCGG
GAAGAGGCGTGCCGGGAACGGGACGTCGCACTCGCCGAGCGTGAAGCCGATGTGAACCGCGATGAGGTGGCCTCACACCG
GCTGGGCGAGCAACTCGCGAAACGCGAGGAGGCCGTTGCCGGACGCGCGGCGATAGCGGCGAGGGCTTCTGAGCTGGAGG
CCCGGGAAAAGGACCTAGCGGCGGGCGGGCAGCCCGGCAGCGCGGAGTTGGTGAGCCAGCCTACCACGGCTCAGAGCACT
CTCGCCGACCTAGAGCGCTTGGTGCAAGATCAGGCTGGGGAGATTGCGGCCCTCCGCCTCACCAACGAGATCGGACCTGG
GCAGCTCTCCGATGCCGTCGATCAGCTGGAGCGCGCGGGGCGCCGAGTACACAGCCAGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis