Browse Element(s) Details


Os.34156.1.S1_a_at

Description gb:AK072636.1
DB_XREF= gi:32982659
TID=Os.34156.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0014K08.23 (OSJNBa0014K08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133F04, full insert sequence.
FL= gb:AK072636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5424010/11Nup85 Nucleoporin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed
LOC_Os01g54250OsAffx.20380.1.S1_x_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.20380.1.S1_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22711.4.A1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22927.1.S1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54260OsAffx.21171.3.S1_x_at1/111+31544522..31546033retrotransposon protein, putative, unclassified
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54280OsAffx.11599.1.S1_at11/111+31556935..31557291hypothetical protein
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34156.1.S1_a_at--1089--951Chr01:31537215..31537239 (25 bp)
AGGACTGGCGAGTCTGTTCGGCAAA
LOC_Os01g54240
Os.34156.1.S1_a_at--78--2631NONE
AACCGTGGAGTTTCTTATACAGCTG
NONE
Os.34156.1.S1_a_at--1118--8451Chr01:31537433..31537457 (25 bp)
TGGCTACCACTTTTACATGACTCGG
LOC_Os01g54240
Os.34156.1.S1_a_at--466--7391Chr01:31537586..31537610 (25 bp)
GTGAGGCTTCTCAATTGCAAACCCT
LOC_Os01g54240
Os.34156.1.S1_a_at--375--5131Chr01:31537602..31537626 (25 bp)
GCAAACCCTGCCCATTGTTAAATGT
LOC_Os01g54240
Os.34156.1.S1_a_at--489--6671Chr01:31537625..31537649 (25 bp)
GTTGCTGAAACGACTTTGTTGCTCA
LOC_Os01g54240
Os.34156.1.S1_a_at--485--1431Chr01:31537660..31537684 (25 bp)
AGAACTGTCATTGGCCAAACTTCGG
LOC_Os01g54240
Os.34156.1.S1_a_at--471--9991Chr01:31537707..31537731 (25 bp)
TACCAAGCCATGCATTGAACTCCGT
LOC_Os01g54240
Os.34156.1.S1_a_at--468--5471Chr01:31537723..31537747 (25 bp)
GAACTCCGTCAGATTAGCTCTAGCA
LOC_Os01g54240
Os.34156.1.S1_a_at--909--10011Chr01:31537743..31537767 (25 bp)
TAGCATCAAACCTTGCGCGTGCAAT
LOC_Os01g54240
Os.34156.1.S1_a_at--1104--1131Chr01:31537807..31537831 (25 bp)
AGTGCCACATCCACTTTGCTGGAAG
LOC_Os01g54240
Target Sequence 
AGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTG
GCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGT
TGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTG
AACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGT
ATGAGTGCCACATCCACTTTGCTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34156.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis