Browse Element(s) Details


Os.27911.1.S1_at

Description gb:AK121896.1
DB_XREF= gi:37991519
TID=Os.27911.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0014K08.18 (OSJNBa0014K08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105E11, full insert sequence.
FL= gb:AK121896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5421011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27911.1.S1_at--3--1671Chr01:31507574..31507598 (25 bp)
AGCCCCACCTTCATGGTATCGAAGC
LOC_Os01g54210
Os.27911.1.S1_at--409--651Chr01:31507430..31507454 (25 bp)
ATGCAGAGCTCCATGCTGTTCGACG
LOC_Os01g54210
Os.27911.1.S1_at--307--10671Chr01:31507346..31507370 (25 bp)
TTCCGGCCGCCCATCTAGAGATGAG
LOC_Os01g54210
Os.27911.1.S1_at--724--6511Chr01:31507244..31507268 (25 bp)
GATATTTTCTTAGGAGTTTCCCCAG
LOC_Os01g54210
Os.27911.1.S1_at--948--9391Chr01:31507201..31507225 (25 bp)
TCGTTTAGTTTGTGCGCTTTTGCTC
LOC_Os01g54210
Os.27911.1.S1_at--140--9091Chr01:31507181..31507205 (25 bp)
TGCTCAGCTCGTCGAATTTTTCGTG
LOC_Os01g54210
Os.27911.1.S1_at--390--6311Chr01:31507142..31507166 (25 bp)
GATGCTCTTTAAGTTTACCACCTTT
LOC_Os01g54210
Os.27911.1.S1_at--544--9971Chr01:31507127..31507151 (25 bp)
TACCACCTTTTCTAGCCGGGAGTTG
LOC_Os01g54210
Os.27911.1.S1_at--333--8051Chr01:31507109..31507133 (25 bp)
GGAGTTGATTTCTCTAGCTTCTACT
LOC_Os01g54210
Os.27911.1.S1_at--36--10011Chr01:31507095..31507119 (25 bp)
TAGCTTCTACTTATCTTCCTCTCTA
LOC_Os01g54210
Os.27911.1.S1_at--1025--3631Chr01:31507081..31507105 (25 bp)
CTTCCTCTCTATCTTGCCATTTAAT
LOC_Os01g54210
Target Sequence 
AGCCCCACCTTCATGGTATCGAAGCACTCCAACTCCCACCGCAAGGTGCTGGAGCTGCGCCGGCAGAAGGAGATGCACCA
GCAGACGCCGCATCATCACCAGCCGCAGGTGGCCGCCGCCGGTGGAGTGGGGAGCCTAATGCACATGCAGAGCTCCATGC
TGTTCGACGGAGTGTCGCCCGTCGTGAGCGGCGACGACTTCTTGATCCACCACCACCTAAGGACAGACTTCCGGCCGCCC
ATCTAGAGATGAGTCGTGTGCTAGAATTGATCAATTAGCCCATGAATAATCTAAAAGAAACCCTTGAANNAAAAAAAAAA
CAGAAGAACTGATATTTTCTTAGGAGTTTCCCCAGTTTTTGTCTCTTTTCCCTTCGTTTAGTTTGTGCGCTTTTGCTCAG
CTCGTCGAATTTTTCGTGTCAATTTTGTTTATGATGCTCTTTAAGTTTACCACCTTTTCTAGCCGGGAGTTGATTTCTCT
AGCTTCTACTTATCTTCCTCTCTATCTTGCCATTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis