Browse Element(s) Details


OsAffx.21629.1.S1_x_at

Description tigr:9629.m05282
TID=OsAffx.21629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g541809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21629.1.S1_x_at--1063--7612Chr01:31490185..31490209 (25 bp)
GGGAACACTCTGCAACAACTTCTGT
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--364--2211Chr01:31490199..31490223 (25 bp)
ACAACTTCTGTTACGGAGTGTTCAT
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--793--2051Chr01:31490202..31490226 (25 bp)
ACTTCTGTTACGGAGTGTTCATTTA
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--825--3851Chr01:31490206..31490230 (25 bp)
CTGTTACGGAGTGTTCATTTAGAAC
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--416--7611Chr01:31490235..31490259 (25 bp)
GGGAACACCAGGATATTGGAGTATT
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--512--6511Chr01:31490246..31490270 (25 bp)
GATATTGGAGTATTACACTAGCGAA
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--55--151NONE
ATTACACTAGCGAATATGGCGAGGA
NONE
OsAffx.21629.1.S1_x_at--118--2031NONE
ACTAGCGAATATGGCGAGGACAGCG
NONE
OsAffx.21629.1.S1_x_at--1145--1751Chr01:31491720..31491744 (25 bp)
ACCTCCGCGAGGTCTGTGACAGCCA
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--153--4131Chr01:31491725..31491749 (25 bp)
CGCGAGGTCTGTGACAGCCAGGCCA
LOC_Os01g54180
OsAffx.21629.1.S1_x_at--754--3651Chr01:31491804..31491828 (25 bp)
CTTCTCACTCTCAGGACGGCACAGC
LOC_Os01g54180
Target Sequence 
GGGAACACTCTGCAACAACTTCTGTTACGGAGTGTTCATTTAGAACACTGGGGAACACCAGGATATTGGAGTATTACACT
AGCGAATATGGCGAGGACAGCGGCCGGCAGAGTTGAGCGTGGCGGTGGCCGCGGTGGACGAGCGTGTGGCCGCCGGAGCC
ACCCCTCATCGCCGGCGCCATGGCCGTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGTGCTCGTCGGCCGCCTCCGC
ACCGCCTTCGACGAGCACGGAGGCCACCCCGAGGCCAACCCGTTCGGCGCCCGCGTTGTCCGCCTCTACCTCCGCGAGGT
CTGTGACAGCCAGGCCAAGGTGCGCGGCATCGCCTACGAGAAGAAGCGTCGGAAGCGCCCGCCCACCTCGTCTTCTCACT
CTCAGGACGGCACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21629.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis