Browse Element(s) Details


Os.27911.2.S1_at

Description gb:AK062377.1
DB_XREF= gi:32972395
TID=Os.27911.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0014K08.18 (OSJNBa0014K08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B02, full insert sequence.
FL= gb:AK062377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5421011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27911.2.S1_at--711--5851Chr01:31508717..31508741 (25 bp)
GAGCCGGTAAATTCTTTGGCCACCT
LOC_Os01g54210
Os.27911.2.S1_at--674--10871Chr01:31508702..31508726 (25 bp)
TTGGCCACCTTTTGTCTTGTTAATT
LOC_Os01g54210
Os.27911.2.S1_at--438--8791Chr01:31508685..31508709 (25 bp)
TGTTAATTACCTTGGATTTTGCAGT
LOC_Os01g54210
Os.27911.2.S1_at--213--9051Chr01:31508666..31508690 (25 bp)
TGCAGTAGAGGTGCCAATCATTTCT
LOC_Os01g54210
Os.27911.2.S1_at--590--3071Chr01:31508651..31508675 (25 bp)
AATCATTTCTGGCAGCTCCTGCATA
LOC_Os01g54210
Os.27911.2.S1_at--585--3811Chr01:31508636..31508660 (25 bp)
CTCCTGCATATCACTTCTTCTGAAA
LOC_Os01g54210
Os.27911.2.S1_at--493--2051Chr01:31508624..31508648 (25 bp)
ACTTCTTCTGAAATTGTCGTCCCTT
LOC_Os01g54210
Os.27911.2.S1_at--858--3171Chr01:31508613..31508637 (25 bp)
AATTGTCGTCCCTTTCATTTGCTGA
LOC_Os01g54210
Os.27911.2.S1_at--552--10271Chr01:31508596..31508620 (25 bp)
TTTGCTGAACTGATCTAAACTAGAG
LOC_Os01g54210
Os.27911.2.S1_at--119--10431Chr01:31508562..31508586 (25 bp)
TTATCATCTTGTTTTACGCCTCGAG
LOC_Os01g54210
Os.27911.2.S1_at--629--10451Chr01:31508549..31508573 (25 bp)
TTACGCCTCGAGAGAATTTGAATGC
LOC_Os01g54210
Target Sequence 
GAGCCGGTAAATTCTTTGGCCACCTTTTGTCTTGTTAATTACCTTGGATTTTGCAGTAGAGGTGCCAATCATTTCTGGCA
GCTCCTGCATATCACTTCTTCTGAAATTGTCGTCCCTTTCATTTGCTGAACTGATCTAAACTAGAGCTATGTATTTTATC
ATCTTGTTTTACGCCTCGAGAGAATTTGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27911.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis