Browse Element(s) Details

Os.30021.1.S1_at

Description

gb:AK071107.1
DB_XREF= gi:32981130
TID=Os.30021.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydroxylase (OSJNBa0010E04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076A13, full insert sequence.
FL= gb:AK071107.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g61330	10/11	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g61270	Os.38099.2.S1_x_at	11/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.38099.1.S1_at	10/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.7260.1.S1_x_at	2/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61280	Os.7260.1.S1_x_at	11/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280	Os.38099.2.S1_x_at	4/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290	OsAffx.22646.1.S1_at	11/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61290	OsAffx.4492.1.S1_x_at	1/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61310	Os.19976.1.S1_at	10/11	3	+	34749011..34752174	D-mannose binding lectin family protein, expressed
LOC_Os03g61319	OsAffx.25789.1.S1_at	11/11	3	+	34753071..34754021	No apical meristem protein
LOC_Os03g61330	Os.30021.1.S1_at	10/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330	Os.30021.2.S1_at	9/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340	Os.25535.1.S1_at	11/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.3.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.2.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.1.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.3.S1_x_at	6/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370	OsAffx.31869.1.S1_at	10/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.5.S1_x_at	4/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_at	2/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.2.S1_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.3.S1_s_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_x_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61380	OsAffx.22711.4.S1_at	11/11	3	+	34775361..34776347	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.3.S1_x_at	11/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.3.S1_at	11/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.1.S1_x_at	2/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.1.S1_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.2.S1_x_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.1.S1_x_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.8420.1.S1_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.2.S1_at	11/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.4.S1_x_at	5/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.3.S1_x_at	3/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.22692.1.A1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.20729.1.S1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.5.S1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0005739	cellular_component	mitochondrion
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.30021.1.S1_at--318--363	1	NONE	CTTGATGTGATAGAGCTTCGAGAGC	NONE
Os.30021.1.S1_at--558--149	1	Chr03:34756201..34756225 (25 bp)	AGCAAATCTCTTGTCGCCAAGCACA	LOC_Os03g61330
Os.30021.1.S1_at--163--1083	1	Chr03:34756191..34756215 (25 bp)	TTGTCGCCAAGCACACTTGATTTGT	LOC_Os03g61330
Os.30021.1.S1_at--905--331	1	Chr03:34756178..34756202 (25 bp)	CACTTGATTTGTCTACCTGTGGCAA	LOC_Os03g61330
Os.30021.1.S1_at--350--997	1	Chr03:34756165..34756189 (25 bp)	TACCTGTGGCAAAATACGCAGCGGT	LOC_Os03g61330
Os.30021.1.S1_at--904--993	1	Chr03:34756151..34756175 (25 bp)	TACGCAGCGGTAGTAATACCCATGT	LOC_Os03g61330
Os.30021.1.S1_at--100--705	1	Chr03:34756128..34756152 (25 bp)	GTAAATATTATGCTGCCGATTCCAT	LOC_Os03g61330
Os.30021.1.S1_at--800--1021	1	Chr03:34756123..34756147 (25 bp)	TATTATGCTGCCGATTCCATCTAAC	LOC_Os03g61330
Os.30021.1.S1_at--773--449	1	Chr03:34756114..34756138 (25 bp)	GCCGATTCCATCTAACAGCTAAACT	LOC_Os03g61330
Os.30021.1.S1_at--689--215	1	Chr03:34756100..34756124 (25 bp)	ACAGCTAAACTGTTAATGTTGTGAA	LOC_Os03g61330
Os.30021.1.S1_at--403--663	1	Chr03:34756083..34756107 (25 bp)	GTTGTGAATGTCTTGTTGAAATTAT	LOC_Os03g61330

Target Sequence

CTTGATGTGATAGAGCTTCGAGAGCATTTGTATCAAGAAAATCCTGGATCTGTTCTTGGGAAATCCAGACCGTACTTTAC
CCCCACATTGTTATCCCGGATCTGTTTATAGCAAACAGACCTTTCATGAACTATACCGGTGCTGTATTTTTGTCCATGTT
GATGGAGCTCTAAGCTCTCTGCAATAATAGCAAATCTCTTGTCGCCAAGCACACTTGATTTGTCTACCTGTGGCAAAATA
CGCAGCGGTAGTAATACCCATGTAAATATTATGCTGCCGATTCCATCTAACAGCTAAACTGTTAATGTTGTGAATGTCTT
GTTGAAATTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis