Browse Element(s) Details


OsAffx.22692.1.A1_x_at

Description gb:NM_184803.1
DB_XREF= gi:34896695
TID=OsAffx.22692.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087M10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g614001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61330Os.30021.1.S1_at10/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330Os.30021.2.S1_at9/113+34756059..34759297Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340Os.25535.1.S1_at11/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.3.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.2.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340Os.30886.1.S1_x_at1/113+34759621..34762463hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.1.S1_x_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.1.S1_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.2.S1_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.2.S1_x_at11/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360Os.30886.3.S1_x_at6/113+34764436..34767878hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370OsAffx.31869.1.S1_at10/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.5.S1_x_at4/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.4.S1_at2/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.2.S1_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.3.S1_s_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61370OsAffx.31869.4.S1_x_at1/113+34770196..34771311retrotransposon protein, putative, unclassified
LOC_Os03g61380OsAffx.22711.4.S1_at11/113+34775361..34776347retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_x_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.1.S1_x_at2/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.2.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.8420.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.2.S1_at11/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.4.S1_x_at5/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.3.S1_x_at3/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.22692.1.A1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.20729.1.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.5.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61410Os.25292.1.S1_a_at11/113+34790477..34791484expressed protein
LOC_Os03g61419NANA3+34792167..34793228hypothetical protein
LOC_Os03g61430OsAffx.13570.1.S1_at11/113+34796047..34796818Protein of unknown function, DUF614 containing protein
LOC_Os03g61430OsAffx.22650.1.S1_x_at3/113+34796047..34796818Protein of unknown function, DUF614 containing protein
LOC_Os03g61440OsAffx.25790.1.S1_at11/113+34799694..34800356Protein of unknown function, DUF614 containing protein
LOC_Os03g61450NANA3+34803207..34804235Transposable element protein, putative, MuDR
LOC_Os03g61460OsAffx.22940.1.S1_s_at11/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_s_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.3.S1_x_at8/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_x_at3/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_at2/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.31552.2.S1_at1/113+34804694..34805856hypothetical protein
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22692.1.A1_x_at--541--9291Chr03:22194454..22194478 (25 bp)
TCCGTCAAACCGCTGCTGGTGCAGG
NONE
OsAffx.22692.1.A1_x_at--8--8871Chr03:22194435..22194459 (25 bp)
TGCAGGGAGGACTCCGGTTCCCGAT
NONE
OsAffx.22692.1.A1_x_at--865--4132Chr03:22194397..22194421 (25 bp)
CGCTCGTCTCCTTCTGCTGGCGTGG
NONE
OsAffx.22692.1.A1_x_at--410--7651Chr03:22194373..22194397 (25 bp)
GGGAGGGCATTCACCATCGCCGTCG
NONE
OsAffx.22692.1.A1_x_at--403--7171Chr03:22194284..22194308 (25 bp)
GTCTCCGTCGCCAACGCTGGGAGGT
NONE
OsAffx.22692.1.A1_x_at--825--6131Chr03:22194264..22194288 (25 bp)
GAGGTGCCCGCGTCGTTGCCCGTTC
NONE
OsAffx.22692.1.A1_x_at--1101--9251Chr03:22194206..22194230 (25 bp)
TCCGTCGAACCATCGCTAGCGTAGG
NONE
OsAffx.22692.1.A1_x_at--815--1731Chr03:22194198..22194222 (25 bp)
ACCATCGCTAGCGTAGGGAGGGCTC
NONE
OsAffx.22692.1.A1_x_at--420--4191Chr03:22194139..22194163 (25 bp)
CCCTCCCTCGCGAAGGTCTTGTTGT
NONE
OsAffx.22692.1.A1_x_at--889--5311Chr03:22194128..22194152 (25 bp)
GAAGGTCTTGTTGTCCCCACTGATT
NONE
OsAffx.22692.1.A1_x_at--341--10791Chr03:22194121..22194145 (25 bp)
TTGTTGTCCCCACTGATTCGCCGCT
NONE
Target Sequence 
TCCGTCAAACCGCTGCTGGTGCAGGGAGGACTCCGGTTCCCGATCCAACCGACGACGCGCTCGTCTCCTTCTGCTGGCGT
GGGGAGGGCATTCACCATCGCCGTCGCCAGCGCTGGGAGGTGCCCGCGTCGTCACCCGTTCCCCACGCCGTCCAGTCCCC
TGCTGCCACCGTCTCCGTCGCCAACGCTGGGAGGTGCCCGCGTCGTTGCCCGTTCCCCCATGCCGTCCAGTCCCCCGCTG
CCACCACCTCCGTCGAACCATCGCTAGCGTAGGGAGGGCTCCGCGCGGCGGACTCCGAAAACGCCGCTGCCTTCTCCCTC
CCTCGCGAAGGTCTTGTTGTCCCCACTGATTCGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22692.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis