Browse Element(s) Details


OsAffx.25790.1.S1_at

Description tigr:9631.m06061
TID=OsAffx.25790.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6144011/11Protein of unknown function, DUF614 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61380OsAffx.22711.4.S1_at11/113+34775361..34776347retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_x_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.3.S1_at11/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.22711.1.S1_x_at2/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.2.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.20380.1.S1_x_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61390OsAffx.8420.1.S1_at1/113+34779831..34782133retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.2.S1_at11/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.4.S1_x_at5/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.3.S1_x_at3/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.22692.1.A1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.20729.1.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61400OsAffx.21171.5.S1_x_at1/113+34782778..34788534retrotransposon protein, putative, unclassified
LOC_Os03g61410Os.25292.1.S1_a_at11/113+34790477..34791484expressed protein
LOC_Os03g61419NANA3+34792167..34793228hypothetical protein
LOC_Os03g61430OsAffx.13570.1.S1_at11/113+34796047..34796818Protein of unknown function, DUF614 containing protein
LOC_Os03g61430OsAffx.22650.1.S1_x_at3/113+34796047..34796818Protein of unknown function, DUF614 containing protein
LOC_Os03g61440OsAffx.25790.1.S1_at11/113+34799694..34800356Protein of unknown function, DUF614 containing protein
LOC_Os03g61450NANA3+34803207..34804235Transposable element protein, putative, MuDR
LOC_Os03g61460OsAffx.22940.1.S1_s_at11/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_s_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.3.S1_x_at8/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_x_at3/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_at2/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.31552.2.S1_at1/113+34804694..34805856hypothetical protein
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61490OsAffx.22650.2.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61490OsAffx.22650.1.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25790.1.S1_at--718--4471Chr03:34800290..34800314 (25 bp)
GCCTGCTTCAATGACTGCGAAGTTT
LOC_Os03g61440
OsAffx.25790.1.S1_at--44--691Chr03:34800028..34800304 (25 bp)
ATGACTGCGAAGTTTGTTGCTTGAC
LOC_Os03g61440
OsAffx.25790.1.S1_at--203--10791Chr03:34800015..34800037 (23 bp)
TTGTTGCTTGACGACGGTGTGCCCG
LOC_Os03g61440
OsAffx.25790.1.S1_at--253--8371Chr03:34799931..34799955 (25 bp)
GGCGGGCGTGATGTGCGTGCTGCTC
LOC_Os03g61440
OsAffx.25790.1.S1_at--630--5171Chr03:34799860..34799884 (25 bp)
GCAAGATGCGCGACAGCTTCCACCT
LOC_Os03g61440
OsAffx.25790.1.S1_at--834--4231Chr03:34799833..34799857 (25 bp)
CCGAGGACCCATGCTGCGACTGCTG
LOC_Os03g61440
OsAffx.25790.1.S1_at--95--8711Chr03:34799779..34799803 (25 bp)
TGTGCCAGGAGTACAGGCACCTCAA
LOC_Os03g61440
OsAffx.25790.1.S1_at--684--8031Chr03:34799772..34799796 (25 bp)
GGAGTACAGGCACCTCAAGAGCCTC
LOC_Os03g61440
OsAffx.25790.1.S1_at--1121--3931Chr03:34799748..34799772 (25 bp)
CGGCTACAAACCCTCGCTTGGCTGG
LOC_Os03g61440
OsAffx.25790.1.S1_at--564--9351Chr03:34799735..34799759 (25 bp)
TCGCTTGGCTGGCTCGGAAACAACC
LOC_Os03g61440
OsAffx.25790.1.S1_at--889--8471Chr03:34799726..34799750 (25 bp)
TGGCTCGGAAACAACCAGCACGTCC
LOC_Os03g61440
Target Sequence 
GCCTGCTTCAATGACTGCGAAGTTTGTTGCTTGACGACGGTGTGCCCGTGCATCACGTTCGGGCGGAGCGCGGAGATCGT
GTCGAGGGGGGAGAGGACGTGCTGCGCGGCGGGCGTGATGTGCGTGCTGCTCGGCTTCTTCGCCCACTGCCACTGCCTCT
ACTCCTGCTGCTACCGCGGCAAGATGCGCGACAGCTTCCACCTCCCCGAGGACCCATGCTGCGACTGCTGCGTCCACGCC
CTCTGCCTGCAGTGCGCGCTGTGCCAGGAGTACAGGCACCTCAAGAGCCTCGGCTACAAACCCTCGCTTGGCTGGCTCGG
AAACAACCAGCACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis