Browse Element(s) Details


Os.34496.1.S1_at

Description gb:AK071173.1
DB_XREF= gi:32981196
TID=Os.34496.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0027B08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082F07, full insert sequence.
FL= gb:AK071173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6150011/11PGP224, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61440OsAffx.25790.1.S1_at11/113+34799694..34800356Protein of unknown function, DUF614 containing protein
LOC_Os03g61450NANA3+34803207..34804235Transposable element protein, putative, MuDR
LOC_Os03g61460OsAffx.22940.1.S1_s_at11/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_s_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.3.S1_x_at8/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_x_at3/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_at2/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.31552.2.S1_at1/113+34804694..34805856hypothetical protein
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61490OsAffx.22650.2.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61490OsAffx.22650.1.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34496.1.S1_at--1118--7551Chr03:34822730..34822754 (25 bp)
GGGCCGTTAAATGGATTAGCTAGCT
LOC_Os03g61500
Os.34496.1.S1_at--953--10451Chr03:34822715..34822739 (25 bp)
TTAGCTAGCTATAGCGTCACCTCGT
LOC_Os03g61500
Os.34496.1.S1_at--1017--7091Chr03:34822700..34822724 (25 bp)
GTCACCTCGTATCTATCATATCATC
LOC_Os03g61500
Os.34496.1.S1_at--74--9391Chr03:34822677..34822701 (25 bp)
TCGATCGATCGTACTTTGGGCGTGT
LOC_Os03g61500
Os.34496.1.S1_at--159--4672Chr03:34822658..34822682 (25 bp)
GCGTGTGAAGTGGTGTCCAGTTAAA
LOC_Os03g61500
Os.34496.1.S1_at--551--5911Chr03:34822615..34822639 (25 bp)
GAGCTAGTTATAGTATCCAGTTTTT
LOC_Os03g61500
Os.34496.1.S1_at--1115--6471Chr03:34822542..34822566 (25 bp)
GATACTATCTACTATGCCTCTATAT
LOC_Os03g61500
Os.34496.1.S1_at--95--1211Chr03:34822504..34822528 (25 bp)
AGTTTGTGTAAGTATGGTGACGCAT
LOC_Os03g61500
Os.34496.1.S1_at--1123--5792Chr03:34822486..34822510 (25 bp)
GACGCATGGTCAGGTTTTGTTTGTA
LOC_Os03g61500
Os.34496.1.S1_at--95--7892Chr03:34822474..34822498 (25 bp)
GGTTTTGTTTGTAATTCTCTGCACT
LOC_Os03g61500
Os.34496.1.S1_at--126--10591Chr03:34822460..34822484 (25 bp)
TTCTCTGCACTTAATCAATTGTTTG
LOC_Os03g61500
Target Sequence 
GGGCCGTTAAATGGATTAGCTAGCTATAGCGTCACCTCGTATCTATCATATCATCGATCGATCGTACTTTGGGCGTGTGA
AGTGGTGTCCAGTTAAAAAAAAGTTTTTTTTTTGGGAGCTAGTTATAGTATCCAGTTTTTTAAAAGAAATTTATAAGTGG
TATATTAATTATATGCGTTTTTTTACTTGATACTATCTACTATGCCTCTATATACTCCTGTAATTAAGTTTGTGTAAGTA
TGGTGACGCATGGTCAGGTTTTGTTTGTAATTCTCTGCACTTAATCAATTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis