Browse Element(s) Details


Os.5700.1.S1_at

Description gb:AK109894.1
DB_XREF= gi:32995103
TID=Os.5700.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0027B08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E11, full insert sequence.
FL= gb:AK109894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g615309/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61490OsAffx.22650.2.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61490OsAffx.22650.1.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5700.1.S1_at--491--1891Chr03:34834774..34834798 (25 bp)
ACGTCGTTCGTGAGGAACCTGGCGA
LOC_Os03g61530
Os.5700.1.S1_at--739--9671Chr03:34834491..34834515 (25 bp)
TCACCAATGCGTCCATGAGCAAACA
LOC_Os03g61530
Os.5700.1.S1_at--620--4651Chr03:34834483..34834507 (25 bp)
GCGTCCATGAGCAAACATCCGTAGC
LOC_Os03g61530
Os.5700.1.S1_at--23--3551Chr03:34834468..34834492 (25 bp)
CATCCGTAGCAAATCATCGTGTATA
LOC_Os03g61530
Os.5700.1.S1_at--460--7631Chr03:34834423..34834447 (25 bp)
GGGAGACCTCTATCCAAACATTTAT
LOC_Os03g61530
Os.5700.1.S1_at--395--3351Chr03:34834365..34834389 (25 bp)
CACGAGATCTCGGAATCGGGATTGA
LOC_Os03g61530
Os.5700.1.S1_at--717--3691NONE
CTATATACCCTTTACCACTGTACTA
NONE
Os.5700.1.S1_at--892--3331Chr03:34834325..34834347 (23 bp)
CACTGTACTATCATGTGCATTTCTA
LOC_Os03g61530
Os.5700.1.S1_at--169--9071NONE
TGCATTTCTATGTATCCTCGTGTAT
NONE
Os.5700.1.S1_at--523--6891Chr03:34834298..34834322 (25 bp)
GTATCCTCGTGTATATATACGACCA
LOC_Os03g61530
Os.5700.1.S1_at--682--231Chr03:34834284..34834308 (25 bp)
ATATACGACCACCAAATTCTCTCTT
LOC_Os03g61530
Target Sequence 
ACGTCGTTCGTGAGGAACCTGGCGAAGATGCCCGGCGGCATGCCGCCGGAGTGCCTGGAAGGGTGCGTGGCGAAGTTCCA
GGAGGCGGTGGCGGAGCTGAGGCGGTCCGAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGA
CGGAGGCCAGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCGGAGATCGCCGAC
AGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACCAATGCGTCCATGAGCAAACATCCGTAGCAAAT
CATCGTGTATAACAAAAACGAGATTTGGAGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTA
AAGATTGAACACGAGATCTCGGAATCGGGATTGAAACCTATATACCCTTTACCACTGTACTATCATGTGCATTTCTATGT
ATCCTCGTGTATATATACGACCACCAAATTCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis