Browse Element(s) Details


Os.26697.2.S1_x_at

Description gb:NM_185084.1
DB_XREF= gi:34897253
TID=Os.26697.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0027B08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0027B08.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6158011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26697.2.S1_x_at--532--131Chr03:34859965..34859989 (25 bp)
ATTAAGAGTCTCATCCGTGGAAGCT
LOC_Os03g61580
Os.26697.2.S1_x_at--930--10131Chr03:34860038..34860062 (25 bp)
TATGCATCTGCAAGTTCTCCAATCT
LOC_Os03g61580
Os.26697.2.S1_x_at--482--2431Chr03:34860237..34860261 (25 bp)
AAAAGCTGTGATCTGCTGCCATCCA
LOC_Os03g61580
Os.26697.2.S1_x_at--335--291Chr03:34860789..34860813 (25 bp)
ATAGAATTCCAACAGGGCCGACGTT
LOC_Os03g61580
Os.26697.2.S1_x_at--47--1391Chr03:34860817..34860841 (25 bp)
AGACCTTGATGCCTGTTTCTTGACA
LOC_Os03g61580
Os.26697.2.S1_x_at--820--71Chr03:34860846..34860869 (24 bp)
ATTGCCTAGCAACACCTTCTAAGGA
LOC_Os03g61580
Os.26697.2.S1_x_at--645--6491Chr03:34860979..34861003 (25 bp)
GATAGCGATAGCACTACACCAGCAT
LOC_Os03g61580
Os.26697.2.S1_x_at--1145--8111Chr03:34861069..34861093 (25 bp)
GGACTGGCATCTTACAAACTTCGCA
LOC_Os03g61580
Os.26697.2.S1_x_at--450--2391Chr03:34861084..34861108 (25 bp)
AAACTTCGCAGCTCCATTTGGGCAT
LOC_Os03g61580
Os.26697.2.S1_x_at--311--2571Chr03:34861159..34861183 (25 bp)
AACTGGCTCAGCTGCGTACAAGTAG
LOC_Os03g61580
Os.26697.2.S1_x_at--148--1531Chr03:34861184..34861208 (25 bp)
AGCATCCAGATTTCCGTTTTTTCGT
LOC_Os03g61580
Target Sequence 
ATTAAGAGTCTCATCCGTGGAAGCTACACATGGGATGGCAAATGGTAGTTTGCGAACTGATGATGCTGATGGTTATGCAT
CTGCAAGTTCTCCAATCTTTCAGTATATGGAGAGGGATCCCCCGTTTTGTAGAGAACCTCTGACAGACAAGGTATCAATT
CTTGCTAGTAGATTTCCAGCTCTGAAGGCATTCAAAAGCTGTGATCTGCTGCCATCCAGTTGGATGTCTGTTGCATGGTA
CCCCATATATAGAATTCCAACAGGGCCGACGTTGGAAGACCTTGATGCCTGTTTCTTGACATTCCATTGCCTAGCAACAC
CTTCTAAGGATAGCGATAGCACTACACCAGCATGCCCTGGTTTTGGTGGCATCAGCCCTTGCGCAAATGCAACTGGCAAG
CTATCTTTGCCTGCCTTTGGACTGGCATCTTACAAACTTCGCAGCTCCATTTGGGCATCCGATGGGACCCAAGGACAGCG
TGTCACCTCGCTGATGGAGGAGGCTGGCAACTGGCTCAGCTGCGTACAAGTAGAGCATCCAGATTTCCGTTTTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26697.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis