Browse Element(s) Details


OsAffx.22651.2.S1_x_at

Description gb:NM_185080.1
DB_XREF= gi:34897245
TID=OsAffx.22651.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0027B08.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6161010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22651.2.S1_x_at--857--7253Chr03:34866476..34866500 (25 bp)
GTCCGGGCACCGAAGCGATGCAGTT
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--1015--1631Chr03:34866489..34866513 (25 bp)
AGCGATGCAGTTGTAGTGGGACTAT
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--1136--10051Chr03:34866502..34866526 (25 bp)
TAGTGGGACTATGGGAGCACCCCGC
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--749--4593Chr03:34866546..34866570 (25 bp)
GCGAACATGTCGAAGCAGATGGCAC
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--480--10511NONE
TTCTCCACCCCGCTAACGAAAAGAT
NONE
OsAffx.22651.2.S1_x_at--302--1793Chr04:27202071..27202090 (20 bp)
ACCCCGCTAACGAAAAGATCAGAGG
NONE
OsAffx.22651.2.S1_x_at--867--393Chr03:34867250..34867274 (25 bp)
ATCAGAGGTGGCATTGTCGTAGCCG
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--462--3833Chr03:34867311..34867335 (25 bp)
CTGCTCATGTTGACGGCCGGGTCGA
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--241--1673Chr03:34867356..34867380 (25 bp)
AGCCCGAACGCCTCGGAGTGAAGTC
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--439--4172Chr03:34867364..34867388 (25 bp)
CGCCTCGGAGTGAAGTCGACGGCAA
LOC_Os03g61610
OsAffx.22651.2.S1_x_at--449--4091Chr03:34867380..34867404 (25 bp)
CGACGGCAAGGGTCCAGATAAGAAG
LOC_Os03g61610
Target Sequence 
GTCCGGGCACCGAAGCGATGCAGTTGTAGTGGGACTATGGGAGCACCCCGCCGACCTCATCCTACCGGGGGCGAACATGT
CGAAGCAGATGGCACAGGTGAGCCGCCGCCGGTTGACCCGCGTGGGCACGGTGTTGTTGCCTACGTTCTCCACCCCGCTA
ACGAAAAGATCAGAGGTGGCATTGTCGTAGCCGGCGCCGGCGGAGGCGAAGCATGCGCCGGCGGCAAGGCTGCTCATGTT
GACGGCCGGGTCGAGGGCTGGGACGAGCGGCGGCAGCCCGAACGCCTCGGAGTGAAGTCGACGGCAAGGGTCCAGATAAG
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22651.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis